PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G45370.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 186aa    MW: 19011.9 Da    PI: 4.5993
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G45370.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.00044104126123
                   EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                   ++C+ Cg  Fs    L  H+r+H
  OB01G45370.1 104 HECTVCGLEFSMGQALGGHMRRH 126
                   78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.6E-4100129IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.92E-6100130No hitNo description
PfamPF139124.6E-12103128IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.949104131IPR007087Zinc finger, C2H2
PROSITE patternPS000280106126IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MASALPFRFV KIYTYSCQIY GQSKRKLLGN SFGFVGDDNH ERGSGEQGDG EPTGARQRAA  60
LAVVAGADGV DAGGEEGAGG GGGVRVQDVQ QAVPAGGRGG ARVHECTVCG LEFSMGQALG  120
GHMRRHRGEP GAAVVITDTD SGGTSVPQPP AEAMPDLNYP PLEDAGDGQE SSSGRSSEPE  180
LLNLLV
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G45370.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126094e-47CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
GenBankCT8313984e-47CT831398.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN012H15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015690352.12e-58PREDICTED: zinc finger protein ZAT5-like
TrEMBLJ3L5N11e-130J3L5N1_ORYBR; Uncharacterized protein
STRINGOB01G45370.11e-131(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50137157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59820.15e-11C2H2 family protein