PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G45460.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WOX
Protein Properties Length: 284aa    MW: 31089.1 Da    PI: 10.5239
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G45460.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox40.83.7e-1340782357
                  SS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
      Homeobox 23 rypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                  r+p+ae++++++++l    +++ ++V++WFqN++a++++
  OB01G45460.1 40 RTPTAEQIQQITARLrehgHIEGKNVFYWFQNHKARQRQ 78
                  89***********************************96 PP
2Wus_type_Homeobox781.3e-2537802265
  Wus_type_Homeobox 22 sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                       +GlrtP++e+iq+ita+L+e+G+ie+kNVfyWFQN+kaR+rqkq
       OB01G45460.1 37 KGLRTPTAEQIQQITARLREHGHIEGKNVFYWFQNHKARQRQKQ 80
                       79****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF000469.8E-114078IPR001356Homeobox domain
SuperFamilySSF466893.15E-74085IPR009057Homeodomain-like
PROSITE profilePS500718.5684279IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.0E-44483IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MAGVPLSPYE SFRRQYMLYL QLAPDHEGRT SRTARGKGLR TPTAEQIQQI TARLREHGHI  60
EGKNVFYWFQ NHKARQRQKQ KQQSFDYFSK LFRRPPPLPV LHRPLVRPFP LTVPPAMPPP  120
PSAPTACNTG GVMYRSPTFM PAAANAGYYP QQQTPVQYTG MEAPPHDKVS VQPPATSMYQ  180
LTAPGGEHFA PAAARGVGDR AEEAGGRGGG GAGRETLQLF PLRPTFVLPD HKPRRAGRAC  240
AAASLTTPSA PASFSGESES SDRRPNSEAP PFYDFFGVHS GGGR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1204210GGRGGGG
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G45460.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0032417e-90AP003241.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0408C03.
GenBankAP0149577e-90AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126097e-90CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006646469.11e-179PREDICTED: WUSCHEL-related homeobox 5-like, partial
SwissprotA2WWU73e-85WOX5_ORYSI; WUSCHEL-related homeobox 5
SwissprotQ8LR863e-85WOX5_ORYSJ; WUSCHEL-related homeobox 5
TrEMBLJ3L5P00.0J3L5P0_ORYBR; Uncharacterized protein
STRINGOB01G45460.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75093548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59340.11e-17WUSCHEL related homeobox 2