PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G45670.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 242aa    MW: 26498.9 Da    PI: 10.064
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G45670.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.42.5e-3294150258
                   --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                    Dgy+WrKYGqK++k++++prsYY+Cts++C++kk+ve+s++dp+++++tYeg+H+h
  OB01G45670.1  94 ADGYKWRKYGQKSIKNNPHPRSYYKCTSSRCSAKKHVEKSTDDPEMLIVTYEGSHHH 150
                   6*******************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.1E-3184151IPR003657WRKY domain
PROSITE profilePS5081128.10588153IPR003657WRKY domain
SuperFamilySSF1182901.03E-2691152IPR003657WRKY domain
SMARTSM007741.1E-3593152IPR003657WRKY domain
PfamPF031061.8E-2695150IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MGEALRAQAA AATTDEVAGA AVWPGELDEH LIGELLGDDD DGALLFPAAD QHSSDQRYSL  60
GAVSSEAADA PRRVGVESKY TSKVRSCGGG KMPADGYKWR KYGQKSIKNN PHPRSYYKCT  120
SSRCSAKKHV EKSTDDPEML IVTYEGSHHH GPHPSSPHLA QPPPSSSSAA AXXXXXXXXX  180
XXXXXXXXXX XXXXXXXXXX XXXXXXTTTR RRRGARRAAP CPRGSLVRRR RRLDIGVVRG  240
AR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-21951501974Probable WRKY transcription factor 4
2lex_A3e-21951501974Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1210231RRRGARRAAPCPRGSLVRRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G45670.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1016163e-95FP101616.1 Phyllostachys edulis cDNA clone: bphyem119j23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLJ3L5R11e-142J3L5R1_ORYBR; Uncharacterized protein
STRINGOB01G45670.11e-143(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP131442633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.17e-22WRKY DNA-binding protein 49