PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G45780.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 73aa    MW: 8016.25 Da    PI: 10.32
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G45780.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like33.31.1e-101213656
       G2-like 36 mkvkgLtlehvkSHLQkYRla 56
                  m+v+gLt+e+v+SHLQkYRl+
  OB01G45780.1  1 MNVDGLTRENVASHLQKYRLY 21
                  9******************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR015575.1E-8120IPR006447Myb domain, plants
SuperFamilySSF466896.45E-5124IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-10124IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 73 aa     Download sequence    Send to blast
MNVDGLTREN VASHLQKYRL YIKRTRVAAT PPPPPPLPPA TCVPWFAAKP PLDTATPPAR  60
TSDATANHET MRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G45780.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0666591e-42AK066659.1 Oryza sativa Japonica Group cDNA clone:J013068K17, full insert sequence.
GenBankAP0032511e-42AP003251.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0446B05.
GenBankAP0149571e-42AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126091e-42CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878116.16e-19transcription factor PCL1-like
TrEMBLJ3L5S26e-45J3L5S2_ORYBR; Uncharacterized protein
STRINGOB01G45780.11e-45(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP162034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05090.15e-11G2-like family protein