PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G47090.1
Common NameLOC102722641
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 904aa    MW: 97479 Da    PI: 5.7741
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G47090.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.10.000357047411355
                   HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH  13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   R+ i +++ eLre++P++      K s  + Lek+++++  Lq
  OB01G47090.1 704 RQMIQDRIKELREIVPSS-----AKCSIDALLEKTIKHMLFLQ 741
                   77899************6.....5999999********99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.1E-357195IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000838.32E-4685742No hitNo description
PROSITE profilePS5088810.271691740IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-4704745IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 904 aa     Download sequence    Send to blast
MAGATPLRDS LRSLCADVGW SYAVFWRATR AADSPQLQLV WGDGHCEREA GAPAISGFEA  60
MDLLLKEKAA ALRGGAGRGG GGGGGEGHAP EGSAGHGQDR VDELVHKAMA QQLHVVGKGV  120
IGQAAVTGLH RWILHDSLDE CEEEDEVLLE MKDQFCAGIQ TVAVIPVLPQ GVIQLGSTKM  180
VMEEASFVDH VRSLFQQLGS SIAVVPHGSF VQDSVMKTPF HKLPGVPTSS LLENLAGSGN  240
TYNDDMINHQ FGHQISPAST IQSFNSVQHF YTGPTFCHSV TTASHCRGFR PDHGNTFTLN  300
SQSENNKSAV LPKNNVSHSE TSNDAFSHAF NPLNEPNVSI SVRRECISIE QHGSCRNGNM  360
KITKGRTASS CTGETNILNK VDDLQSQDCQ TSNATSVNTK FQTMSIVDNT KLQDGSYTIP  420
DAAFVDSTQY PSCFQSLLGN LHGSSTTNSN VIHADTSHNA VPGENNFCPL GDRNATNSSG  480
VPELLVSPIP LGLTGGNDLF DVLQLQQKPS GSNDSEPNDR ESMPYGSEQA VKSLIGCVDD  540
DFTGLITEAD PDQLLDAIVS KIITGHRQNV DSSASCSSSV ASFDRPLHSD CHPYTKGLSS  600
GQMFCNFTSV SPGTIKSEVP AEGLRQSSPS IDKSEGCSQT QQSYRSHIRL WVENNHNVGS  660
DSLSTGQASD SLSAGQCKRS DEIGKSNRKR SRPGESARPR PKDRQMIQDR IKELREIVPS  720
SAKCSIDALL EKTIKHMLFL QNVAKHADKL KESGESKIVS QETQEEGLLL KDNFEGGATW  780
AFEVGTRSMT CPIIVEDLSP PRQMLVEMLC KERGIFLEIA DQIRGLGLTI LKGVMEVRKD  840
KIWARFAVEA NKDVTRMEIF LSLVHLLEPS TGSSILSAGV ENISLPPNGF FPSSIPATGF  900
SNCL
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G47090.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0680330.0AK068033.1 Oryza sativa Japonica Group cDNA clone:J013129B18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006646502.10.0PREDICTED: transcription factor LHW-like
TrEMBLJ3L6530.0J3L653_ORYBR; Uncharacterized protein
STRINGOB01G47090.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP161891314
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.14e-53conserved peptide upstream open reading frame 7