PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G48490.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 168aa    MW: 18980 Da    PI: 12.061
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G48490.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2538.6e-171666155
           AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                  ++y+GVr+++ +g+Wv+eIr+p +   r r +lg++ t+e Aa a++ a   l+g
  OB01G48490.1 16 CRYRGVRRRR-WGKWVSEIRVPGT---RERLWLGSYATPEAAAVAHDTAVYFLRG 66
                  78*****777.**********943...5**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.4E-91666IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-161768IPR016177DNA-binding domain
SMARTSM003802.3E-221780IPR001471AP2/ERF domain
PROSITE profilePS5103220.20517110IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-231768IPR001471AP2/ERF domain
PRINTSPR003678.5E-91829IPR001471AP2/ERF domain
CDDcd000181.71E-132569No hitNo description
PRINTSPR003678.5E-94056IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MSRAGCGGGG GEEERCRYRG VRRRRWGKWV SEIRVPGTRE RLWLGSYATP EAAAVAHDTA  60
VYFLRGSDSX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXRP RRRTRVTSSP  120
SLEPARRPRG TACTLLARLP AGAPEPAAAS SSLSVLRKLA WMTWRFLM
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G48490.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2291999e-76AF229199.1 Oryza sativa chromosome 1 clone OSJNBa0048I01, complete sequence.
GenBankAP0033469e-76AP003346.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0434C04.
GenBankAP0033799e-76AP003379.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0408G07.
GenBankAP0149579e-76AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLJ3L6J31e-43J3L6J3_ORYBR; Uncharacterized protein
STRINGOB01G48490.12e-44(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64332951
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22810.13e-15ERF family protein