PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB01G48710.1

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 133aa MW: 13839.8 Da PI: 8.8078

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB01G48710.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.2	0.00027	2	24	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+ F++ L H+r+H OB01G48710.1 2 HQCKQCPAAFPTGVALGGHMRKH 24 79********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	8.1E-9	2	24	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	8.6	2	29	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	4	24	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 133 aa Download sequence Send to blast
MHQCKQCPAA FPTGVALGGH MRKHLNRPLV VNRKKQKPPQ DGSDLRLSLA PPGQGAAPAP 60 APEPVPAIAA AASPPAQAQP EQPKEEVAEH GAEPASETMP TPAPAPAPEP TPTNRRGRTV 120 RIFGVDVEMP PLG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB01G48710.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015696942.1	2e-14	PREDICTED: zinc finger protein 219-like
TrEMBL	J3L6L5	2e-87	J3L6L5_ORYBR; Uncharacterized protein
STRING	OB01G48710.1	4e-88	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13928	12	24