PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G49350.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 394aa    MW: 40913.2 Da    PI: 6.3396
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G49350.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.83.7e-15193244155
           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  OB01G49350.1 193 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 244
                   57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.6E-10193244IPR001471AP2/ERF domain
CDDcd000181.72E-24193254No hitNo description
SuperFamilySSF541714.77E-18193254IPR016177DNA-binding domain
PROSITE profilePS5103219.045194252IPR001471AP2/ERF domain
SMARTSM003801.5E-33194258IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-18194253IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MATVNNWLAF SLSPQELPPS QANSALISAA TTGDASAAAD VCFNIPQDWS TRGSELSALV  60
AEPKLEDFLG GISFSEQHHG KGGVIPSSAA ACYANSGSSV GYLYPSSSSL QFADSVMVAS  120
SAVVHDGVSG GIDGQGGMRL ICGTTAAEEK GKLARVGKVN NYEKELEEMK HMTRQEFVAS  180
LRRKSSGFSR GASIYRGVTR HHQHGRWQAR IGRVAGNKDL YLGTFSTQEE AAEAYDIAAI  240
KFRGLNAVTN FDMSRYDVKS ILDSGALPAM QHAGGGHGLG SIDNASLEHS TGSNSVVYNG  300
DAGGYMMPMS AASAAATVGV SHDQHAAQGG HGDGGKHVQM GYDNYLVGAD AYGGAGRMPS  360
WTTTPASAPA ATSSSDMTGV CHGGAQLFSV WNDT
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G49350.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2408921e-164AK240892.1 Oryza sativa Japonica Group cDNA, clone: J065030K10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020523523.11e-68AP2-like ethylene-responsive transcription factor AIL5 isoform X1
TrEMBLJ3L6S90.0J3L6S9_ORYBR; Uncharacterized protein
STRINGOB01G49350.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79738151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.12e-59AINTEGUMENTA-like 5