PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB01G49420.1

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 147aa MW: 16448.6 Da PI: 8.5005

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB01G49420.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.9	7.4e-13	81	126	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L++l+P+ +k + +++L Av+YIk+Lq OB01G49420.1 81 SIAERERRTRISKRLKKLQDLVPNM----DKQTNTSDMLDIAVNYIKELQ 126 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.253	75	125	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.1E-16	78	135	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.72E-12	79	130	No hit	No description
Gene3D	G3DSA:4.10.280.10	8.4E-16	80	136	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.7E-13	81	131	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.9E-10	81	126	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 147 aa Download sequence Send to blast
MSSWDDTNSI MFSPPSSSKK ARVGGDHGDD MVSSFSNIDS QFGLSKSSLE MSSMDDFMQL 60 QPDSVACRAR AKRGCATHPR SIAERERRTR ISKRLKKLQD LVPNMDKQTN TSDMLDIAVN 120 YIKELQGQVE KLKHDQANCT CLGKQNC

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB01G49420.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK068254	1e-141	AK068254.1 Oryza sativa Japonica Group cDNA clone:J013149F02, full insert sequence.
GenBank	AK105713	1e-141	AK105713.1 Oryza sativa Japonica Group cDNA clone:001-201-E12, full insert sequence.
GenBank	HQ858859	1e-141	HQ858859.1 Oryza sativa Japonica Group isolate UT1668 bHLH transcription factor mRNA, partial cds.
GenBank	HQ858868	1e-141	HQ858868.1 Oryza sativa Japonica Group isolate UT1677 HLH transcription factor mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015690675.1	1e-105	PREDICTED: transcription factor bHLH128-like, partial
Swissprot	Q8H102	1e-45	BH128_ARATH; Transcription factor bHLH128
TrEMBL	J3L6T6	1e-105	J3L6T6_ORYBR; Uncharacterized protein
STRING	OB01G49420.1	1e-106	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7071	37	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05805.1	6e-48	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]