PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G49600.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 257aa    MW: 27535.6 Da    PI: 5.6942
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G49600.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS88.51.1e-27168256285374
          GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                    E++ +g ei+nvv cega+r+erhe++ +Wr+r+++aGF++vp++  +a++a+  l   +   gy+v ee+g+lvlgWk++p++++S+W+
  OB01G49600.1 168 AEAFHFGAEIRNVVGCEGAARVERHERADQWRRRMSRAGFQSVPIK--MASKAREWLDDNAaAGGYTVAEEKGCLVLGWKGKPVIAASCWK 256
                   68999***************************************96..67889999999887999*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035143.8E-25168256IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MSTEPCRSAL NSISYCSPQQ SHHLNPTQQD ASVICSANQE LDYYYRFYDV DEAAFDGNEV  60
ELVSRVSKLG RVDYLSSPYQ PSWPTAAAHA AGSSSETSRV RKKRFWDVLQ SCKQKVEAQE  120
AMEAPAAAFL DGEGDGVGAG DGGDGGGGGG GGGGADGMRL VQLLVACAEA FHFGAEIRNV  180
VGCEGAARVE RHERADQWRR RMSRAGFQSV PIKMASKARE WLDDNAAAGG YTVAEEKGCL  240
VLGWKGKPVI AASCWKC
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G49600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0037911e-108AP003791.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1065G12.
GenBankAP0067571e-108AP006757.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0551C06.
GenBankAP0149571e-108AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126091e-108CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015690691.11e-156PREDICTED: uncharacterized protein LOC107303918
TrEMBLJ3L6V40.0J3L6V4_ORYBR; Uncharacterized protein
STRINGOB01G49600.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56403354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.17e-20RGA-like 1