PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB01G51080.1

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

SBP

Protein Properties

Length: 281aa MW: 30373.1 Da PI: 7.3323

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB01G51080.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	51.8	2.2e-16	101	134	45	78
TTSSEEETTT--SS--S-STTTT-------S--- CS SBP 45 qCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C+ fh l efDeekrsCr+rL++hn+rrrk+q+ OB01G51080.1 101 TCGWFHLLGEFDEEKRSCRKRLDGHNKRRRKPQP 134 6******************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51141	12.725	45	132	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:4.10.1100.10	7.3E-5	101	119	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	3.8E-9	101	131	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.96E-13	101	137	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MQLGACICPP VLLLPRDTIV FCPHDDAAAA AAADGQNTTE LGLAGGPCVA VAFVAHLTRA 60 TNSSPDIHLN AKTNLAVPSV PHVFHPGKLH GQLLDLTDLD TCGWFHLLGE FDEEKRSCRK 120 RLDGHNKRRR KPQPDPLNPS SLFANHHGAA RFTSYQQIFS TASMSQEAKW PVSAVKTEAD 180 VFQEPYYHGL HLNGGAAASI FHGKGRKHHF PFLTTDHGDA AAAAPFGCQP FTITPSSAES 240 RSSSSSRHSN GGKMFAAHDG ACLVFPVYGE YHPTYDSQLH Y

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	114	131	KRSCRKRLDGHNKRRRKP

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB01G51080.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305\|PubMed:16861571}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK062581	1e-116	AK062581.1 Oryza sativa Japonica Group cDNA clone:001-100-B10, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015690794.1	1e-110	PREDICTED: squamosa promoter-binding-like protein 2
Swissprot	Q0JGI1	1e-63	SPL2_ORYSJ; Squamosa promoter-binding-like protein 2
TrEMBL	J3L7A2	0.0	J3L7A2_ORYBR; Uncharacterized protein
STRING	OB01G51080.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10456	30	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	2e-14	SBP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]