PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB01G51370.1

Common Name

LOC102715444

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 209aa MW: 23096.1 Da PI: 10.3543

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB01G51370.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	100.2	2.9e-31	1	121	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkya.tgkrknratksgyWkatgkdkevlsk.kg 97 +GfrF+Ptdeel+ +yL++kv g +l++ +vi+ +d+ ++ PwdLp ++ e yfF+ +++ +g +ra+ +g+W+a+gk++ v++ + OB01G51370.1 1 MGFRFRPTDEELLLHYLRRKVLGCPLPA-DVIPVADLARLRPWDLP---GDGDGERYFFHLPATSCWrRGGGGSRAAGDGVWRASGKETLVVAPrCK 93 5*************************.99***********...346778999998887766269999************99998688 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 + vg k+tLvf+ ++ g ++dW mheyrl OB01G51370.1 94 RPVGAKRTLVFF---HRGGARSDWAMHEYRL 121 89******...677889******97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	39.42	1	152	IPR003441	NAC domain
Pfam	PF02365	4.0E-20	2	121	IPR003441	NAC domain
SuperFamily	SSF101941	2.62E-37	2	130	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
MGFRFRPTDE ELLLHYLRRK VLGCPLPADV IPVADLARLR PWDLPGDGDG ERYFFHLPAT 60 SCWRRGGGGS RAAGDGVWRA SGKETLVVAP RCKRPVGAKR TLVFFHRGGA RSDWAMHEYR 120 LLPAATNPPP PHHMSGRTPE PSGWGGCRLF KRPTPAHRRS PPRIRAATAR RRSADDMPSS 180 PSSCVTEARE NGGEEEEESS SYSAASNFP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	1e-23	2	158	23	174	NAC domain-containing protein 19
3swm_B	1e-23	2	158	23	174	NAC domain-containing protein 19
3swm_C	1e-23	2	158	23	174	NAC domain-containing protein 19
3swm_D	1e-23	2	158	23	174	NAC domain-containing protein 19
3swp_A	1e-23	2	158	23	174	NAC domain-containing protein 19
3swp_B	1e-23	2	158	23	174	NAC domain-containing protein 19
3swp_C	1e-23	2	158	23	174	NAC domain-containing protein 19
3swp_D	1e-23	2	158	23	174	NAC domain-containing protein 19
3ulx_A	1e-23	2	152	18	168	Stress-induced transcription factor NAC1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB01G51370.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK067450	1e-132	AK067450.1 Oryza sativa Japonica Group cDNA clone:J013106M04, full insert sequence.
GenBank	AK068446	1e-132	AK068446.1 Oryza sativa Japonica Group cDNA clone:J013153H06, full insert sequence.
GenBank	AK288942	1e-132	AK288942.1 Oryza sativa Japonica Group cDNA, clone: J090083D07, full insert sequence.
GenBank	CT829591	1e-132	CT829591.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA017E23, full insert sequence.
GenBank	CT829592	1e-132	CT829592.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA111B01, full insert sequence.
GenBank	CU406744	1e-132	CU406744.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C109J05, full insert sequence.
GenBank	GU120351	1e-132	GU120351.1 Oryza sativa Japonica Group clone KCG153D01 NAC4 protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015692758.1	1e-150	PREDICTED: NAC domain-containing protein 83-like
TrEMBL	J3L7D1	1e-148	J3L7D1_ORYBR; Uncharacterized protein
STRING	OB01G51370.1	1e-149	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8233	30	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13180.1	1e-31	NAC domain containing protein 83

Link Out ? help Back to Top
Entrez Gene	102715444