PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G53390.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family SRS
Protein Properties Length: 480aa    MW: 52999.3 Da    PI: 9.1267
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G53390.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702224.62e-691353002154
        DUF702   2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.....aeaaskrkrelkskkqsalsstklss 93 
                   +sg+a+CqdCGnqakkdC h+RCRtCCksrgfdC+thvkstWvpaa+rrerqq + + s++++ ++     a++ask++r    ++q+++s+t++s+
  OB01G53390.1 135 GSGAATCQDCGNQAKKDCGHQRCRTCCKSRGFDCSTHVKSTWVPAARRRERQQLAGSGSASSSPATattaaAASASKKPR--LLTSQTTTSHTSTSN 229
                   57889**********************************************99987654443322223433444455555..56999999******* PP

        DUF702  94 aeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                   a+++++ +t+s          lP++v+++avfrcvrv+s+ddge+e+aYq++vsi+GhvfkG+LydqG+++
  OB01G53390.1 230 ATTPRSYDTTSshqdpsfresLPRQVRAPAVFRCVRVTSIDDGEDEYAYQATVSINGHVFKGFLYDQGVDD 300
                   ******9999999*******************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051423.1E-64138299IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016239.3E-27140182IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016241.4E-28251298IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MRAQRRXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  60
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXGGNP NPSASAFPYL  120
KKPLPMLDTG GGSSGSGAAT CQDCGNQAKK DCGHQRCRTC CKSRGFDCST HVKSTWVPAA  180
RRRERQQLAG SGSASSSPAT ATTAAAASAS KKPRLLTSQT TTSHTSTSNA TTPRSYDTTS  240
SHQDPSFRES LPRQVRAPAV FRCVRVTSID DGEDEYAYQA TVSINGHVFK GFLYDQGVDD  300
GRLAATSNDD STAGVPNISE LHLGGASVSG PGSNAMREGG SSMVPSDLYG GGSGGGGXXX  360
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  420
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXGGR
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G53390.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1024440.0AK102444.1 Oryza sativa Japonica Group cDNA clone:J033093N15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015691020.11e-180PREDICTED: protein LATERAL ROOT PRIMORDIUM 1, partial
TrEMBLJ3L7Y31e-175J3L7Y3_ORYBR; Uncharacterized protein
STRINGOB01G53390.11e-176(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35793679
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.21e-55Lateral root primordium (LRP) protein-related