PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G54640.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 221aa    MW: 24999.9 Da    PI: 6.629
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G54640.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like78.21e-24112157955
       G2-like   9 eLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                    LH+rFv++v++L G ++A+Pkti++lm+v+gLt+e+v+SHLQkYRl
  OB01G54640.1 112 XLHKRFVDVVAHL-GMKNAVPKTIMQLMNVEGLTRENVASHLQKYRL 157
                   69***********.9*******************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR015573.4E-19112157IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.8E-23112162IPR009057Homeodomain-like
SuperFamilySSF466892.33E-13113161IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MGEEAPEEYD LDMLGGGGGE HERVMEWEAG LPGADKLSPL SQPLAPXXXX XXXXXXXXXX  60
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXLHKRFVDV  120
VAHLGMKNAV PKTIMQLMNV EGLTRENVAS HLQKYRLYVK RMQGLSNEGP SPSDHIFAST  180
PVPHAALHDQ VPYAIHPHPH YNAYAAAVSS YPHHYLHHAD K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A1e-251131601057Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is essential for the generation of the circadian clock oscillation. Binds to specific sites on CCA1 promoter leading to CCA1 activation (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00014PBMTransfer from AT3G46640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G54640.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian oscillation with peaks at subjective dusk. {ECO:0000269|PubMed:16164597}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2065781e-106AB206578.1 Oryza sativa Japonica Group OsPCL1 gene for putative transcription factor, complete cds.
GenBankAP0032771e-106AP003277.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0518C01.
GenBankAP0149571e-106AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankAY5812561e-106AY581256.1 Oryza sativa (japonica cultivar-group) induced protein MgI1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006646735.11e-72PREDICTED: transcription factor PCL1-like
SwissprotQ94DH32e-51PCL1_ORYSJ; Transcription factor PCL1
TrEMBLJ3L8A82e-70J3L8A8_ORYBR; Uncharacterized protein
STRINGOB01G54640.14e-71(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP162034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46640.32e-41G2-like family protein