PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G55040.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 166aa    MW: 18325.9 Da    PI: 9.0088
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G55040.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.81.7e-192458135
          GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                  C+ C+ttkTplWR gp g+k+LCnaCG++yrk+++
  OB01G55040.1 24 CADCHTTKTPLWRGGPGGPKSLCNACGIRYRKRRR 58
                  ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004016.7E-171879IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.9141854IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.65E-132057No hitNo description
Gene3DG3DSA:3.30.50.102.0E-152258IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.71E-152358No hitNo description
PfamPF003202.7E-172458IPR000679Zinc finger, GATA-type
PROSITE patternPS0034402449IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MEIDSVSSPV DKVDPDESNG SKACADCHTT KTPLWRGGPG GPKSLCNACG IRYRKRRRAA  60
LGLDAAATDG AEQKKKAKKE KAEEEDEVTV ELHTAATDGA EQKKKAKKEK AEEEDEVTVE  120
LHMVGFRSKD AAVLKQRRRM RRRKCLREEE RAAILLMALS SGVIYA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15357RKRRR
2135141QRRRMRR
3136143RRRMRRRK
4137142RRMRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00554DAPTransfer from AT5G49300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G55040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2416433e-69AK241643.1 Oryza sativa Japonica Group cDNA, clone: J065189M03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015696091.11e-70PREDICTED: GATA transcription factor 16-like
TrEMBLJ3L8E81e-116J3L8E8_ORYBR; Uncharacterized protein
STRINGOB01G55040.11e-116(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24183892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.19e-18GATA transcription factor 15