PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G55080.1
Common NameLOC102706908
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 206aa    MW: 22448.6 Da    PI: 10.7401
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G55080.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.94.1e-17550147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W+ eEd ll ++v q+G+++W++I++ ++ gR++k+c++rw + 
     OB01G55080.1  5 KGSWSSEEDALLTRLVGQHGPHRWSLISAAIP-GRSGKSCRLRWCNQ 50
                     799*****************************.***********985 PP
2Myb_DNA-binding54.62.5e-1759101347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++T++Ed ll+ a ++lG++ W+tIar ++ gRt++++k++w++ 
     OB01G55080.1  59 PFTPQEDALLAAARARLGNK-WATIARLLP-GRTDNSVKNHWNSN 101
                      89******************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.668155IPR017930Myb domain
SuperFamilySSF466899.36E-30198IPR009057Homeodomain-like
SMARTSM007171.2E-15453IPR001005SANT/Myb domain
PfamPF002492.6E-16550IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-23657IPR009057Homeodomain-like
CDDcd001672.71E-14749No hitNo description
SMARTSM007173.8E-1456104IPR001005SANT/Myb domain
PROSITE profilePS5129417.55956106IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.7E-2158104IPR009057Homeodomain-like
PfamPF002497.8E-1559101IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MGRKKGSWSS EEDALLTRLV GQHGPHRWSL ISAAIPGRSG KSCRLRWCNQ LSPAVHHRPF  60
TPQEDALLAA ARARLGNKWA TIARLLPGRT DNSVKNHWNS NLRRCLRRQA KLAASSATAT  120
TNLQLQLRPE YVLDDGDEPP AIPDPETSLT LSLSLSLPGE SAAVVAQAAG TGRLMVVNAL  180
RQMVREEVAY SLMHMAAAYT KSNGPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-3651044103MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in auxin response. Functions in auxin signal transduction and modulates lateral root growth. Interacts with ARF response factors to promote auxin-responsive gene expression (PubMed:17675404). In response to auxin, binds sequence-specific motifs in the promoter of the auxin-responsive gene IAA19, and activates IAA19 transcription. The IAA19 transcription activation by MYB77 is enhanced by direct interaction between MYB77 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:17675404, ECO:0000269|PubMed:24894996}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G55080.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin (PubMed:17675404). Down-regulated by potassium deprivation (PubMed:15173595). {ECO:0000269|PubMed:15173595, ECO:0000269|PubMed:17675404}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1106311e-122AK110631.1 Oryza sativa Japonica Group cDNA clone:002-169-B11, full insert sequence.
GenBankAP0032281e-122AP003228.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0020E09.
GenBankAP0149571e-122AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126091e-122CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006646750.11e-150PREDICTED: transcriptional activator Myb-like
SwissprotQ9SN122e-49MYB77_ARATH; Transcription factor MYB77
TrEMBLJ3L8F21e-148J3L8F2_ORYBR; Uncharacterized protein
STRINGOB01G55080.11e-149(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135442731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50060.11e-46myb domain protein 77
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]