PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB02G10110.1

Common Name

LOC102718339

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 112aa MW: 12429.1 Da PI: 8.5128

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB02G10110.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.7	4.2e-05	27	49	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ F++ L H+++H OB02G10110.1 27 YPCGFCKREFRSAQALGGHMNVH 49 99*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.5E-6	25	54	No hit	No description
PROSITE profile	PS50157	10.762	27	54	IPR007087	Zinc finger, C2H2
Pfam	PF13912	7.2E-6	27	50	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	29	49	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 112 aa Download sequence Send to blast
MEMSRRREQP WSLGFIVQVQ PATARSYPCG FCKREFRSAQ ALGGHMNVHR RDRARLRLTS 60 PPAPPLLPNL NYPPPQELPG GSGSGSSPPE LGRPPAHDED DALDLELRLA FC

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB02G10110.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006648196.1	1e-76	PREDICTED: transcriptional regulator SUPERMAN-like
TrEMBL	J3L8P4	2e-75	J3L8P4_ORYBR; Uncharacterized protein
STRING	OB02G10110.1	4e-76	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4667	30	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23130.1	4e-16	C2H2 family protein

Link Out ? help Back to Top
Entrez Gene	102718339