PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB02G12880.1
Common NameLOC102706441
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 471aa    MW: 52503.6 Da    PI: 6.0372
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB02G12880.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like103.61.2e-32270324155
       G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                   kprlrWt+eLHerFveav++L G+ekAtPk +l+lmkv+gLt++h+kSHLQkYRl
  OB02G12880.1 270 KPRLRWTQELHERFVEAVNKLEGPEKATPKGVLKLMKVEGLTIYHIKSHLQKYRL 324
                   79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.969267327IPR017930Myb domain
SuperFamilySSF466891.76E-17269324IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.4E-31269325IPR009057Homeodomain-like
TIGRFAMsTIGR015575.3E-25270325IPR006447Myb domain, plants
PfamPF002494.9E-9272323IPR001005SANT/Myb domain
PfamPF143794.7E-22357403IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MIMSTQSVIA VKQFSGPDKM AHTCTVPQLS VHNLSNVNSD LCGSTNSTSL PCAIQSSNIK  60
TELISSSCLP KILPFNPQSS SPDSYPESSL SHMSQADFSD PDFSSSSTFC TRLYTSSSKN  120
SNSCRKTGAL PFLPHPPKCE QQQNSAGQSS SSLLLLGSDL SNSGHGDDEH TDDLKDFLNL  180
SSDLSFHGES SAMAYNEQME FQFLSEQLGI AITNNEESPR LDDIYDRPSQ VLSLPASSCS  240
DQEDMQDTGS PAKLQLSSSR SPSGTGSCNK PRLRWTQELH ERFVEAVNKL EGPEKATPKG  300
VLKLMKVEGL TIYHIKSHLQ KYRLAKYLPE TKEDKKQEEK KTKSANGNDH VKKKNAQMAE  360
ALRMQMEVQK QLHEQLEVQR QLQLRIEEHA RYLQKILEDQ QKARESLSSR TITTEGESPE  420
FALMEKNKNK AETSSEFLSK YKIPDTDPEC HSQINNKKTK PQADLEMVLD E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A6e-26270327259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B6e-26270327259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A6e-26270327259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C6e-26270327259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D6e-26270327259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F6e-26270327259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H6e-26270327259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J6e-26270327259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in phosphate starvation signaling (PubMed:26082401). Binds to P1BS, an imperfect palindromic sequence 5'-GNATATNC-3', to promote the expression of inorganic phosphate (Pi) starvation-responsive genes (PubMed:26082401). Functionally redundant with PHR1 and PHR2 in regulating Pi starvation response and Pi homeostasis (PubMed:26082401). {ECO:0000269|PubMed:26082401}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB02G12880.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated under Pi starvation conditions. {ECO:0000269|PubMed:26082401}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0657040.0AK065704.1 Oryza sativa Japonica Group cDNA clone:J013037C19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006646868.10.0PREDICTED: protein PHR1-LIKE 1-like
SwissprotQ6YXZ40.0PHR3_ORYSJ; Protein PHOSPHATE STARVATION RESPONSE 3
TrEMBLJ3L9H10.0J3L9H1_ORYBR; Uncharacterized protein
STRINGOB02G12880.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45263769
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13040.22e-55G2-like family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]