PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB02G13770.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Whirly
Protein Properties Length: 294aa    MW: 32802.5 Da    PI: 11.3567
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB02G13770.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly185.78.3e-581182542138
        Whirly   2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkveP 98 
                   v+k+kaal++++v+p+f++l+sg  +++r+G+++l++ +a+++rkyd++kkq fals+tev++l++l++ esceffhdp++k+s+eG+v+k+l+v P
  OB02G13770.1 118 VFKGKAALSMHPVLPSFSKLESGGSRVSRNGSVMLTFFPAVGQRKYDYSKKQIFALSPTEVGSLISLGPAESCEFFHDPSMKSSHEGQVKKSLSVTP 214
                   9************************************************************************************************ PP

        Whirly  99 lpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsll 138
                   l + sG+f+n++v n+l+k+ e++s+P++kaefav+r+ l
  OB02G13770.1 215 LGNDSGYFLNITVLNNLQKTTERLSLPITKAEFAVMRTTL 254
                   *************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.106.9E-73105273IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544471.1E-72109294IPR009044ssDNA-binding transcriptional regulator
PfamPF085365.9E-58118252IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MQCPHSTTAF GPKRLGWTVG WWPIYQARGR RHRCRRPPAS RHKRRVVRSL LPIPFGRRAN  60
ATATMQRLSR FGFAPSSSRR VTDLKDALWS GSLTFQHALS TLSADENTSG RKFASYTVFK  120
GKAALSMHPV LPSFSKLESG GSRVSRNGSV MLTFFPAVGQ RKYDYSKKQI FALSPTEVGS  180
LISLGPAESC EFFHDPSMKS SHEGQVKKSL SVTPLGNDSG YFLNITVLNN LQKTTERLSL  240
PITKAEFAVM RTTLSFALPH ILGWDQVLTN HHPSPPAASK PRAERPHPDS EWER
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4kop_A5e-721092718169Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_B5e-721092718169Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_C5e-721092718169Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_D5e-721092718169Single-stranded DNA-binding protein WHY2, mitochondrial
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that associates with mitochondrial DNA and may play a role in the regulation of the gene expression machinery. Seems also to be required to prevent break-induced DNA rearrangements in the mitochondrial genome. Can bind to melt double-stranded DNA in vivo. {ECO:0000269|PubMed:18423020, ECO:0000269|PubMed:20551348, ECO:0000269|PubMed:22762281}.
UniProtSingle-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB02G13770.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0615690.0AK061569.1 Oryza sativa Japonica Group cDNA clone:006-311-F08, full insert sequence.
GenBankAK0994790.0AK099479.1 Oryza sativa Japonica Group cDNA clone:J013025B22, full insert sequence.
GenBankAK1047680.0AK104768.1 Oryza sativa Japonica Group cDNA clone:001-039-A03, full insert sequence.
GenBankCT8285100.0CT828510.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA129J03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006646903.11e-167PREDICTED: single-stranded DNA-binding protein WHY2, mitochondrial
SwissprotD9J0343e-71WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial
SwissprotQ8VYF72e-71WHY2_ARATH; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBLJ3L9R00.0J3L9R0_ORYBR; Uncharacterized protein
STRINGOB02G13770.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30123885
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.17e-67WHIRLY 2