PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB02G15590.1
Common NameLOC102716006
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 206aa    MW: 23400.2 Da    PI: 6.5206
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB02G15590.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.25.7e-081441772154
                   HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
      Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                   k +yp+++++++L +++gL+ +q+ +WF N+R +
  OB02G15590.1 144 KWPYPTEDDKARLVQETGLQLKQINNWFINQRKR 177
                   469*****************************87 PP
2ELK27.66.7e-1098119122
           ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                   ELK++L+++Y+++L+++++E++
  OB02G15590.1  98 ELKNELKQGYKEKLVDIREEIL 119
                   9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF037919.8E-12141IPR005541KNOX2
SMARTSM012566.2E-14142IPR005541KNOX2
PROSITE profilePS5121310.05798118IPR005539ELK domain
SMARTSM011880.002398119IPR005539ELK domain
PfamPF037891.1E-698119IPR005539ELK domain
PROSITE profilePS5007111.353118181IPR001356Homeobox domain
SuperFamilySSF466893.51E-16120183IPR009057Homeodomain-like
SMARTSM003892.3E-10120185IPR001356Homeobox domain
CDDcd000862.18E-11121182No hitNo description
Gene3DG3DSA:1.10.10.604.8E-25125182IPR009057Homeodomain-like
PfamPF059204.6E-18138177IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MTHYVLLLCS FKEQLQQHVR VHAMEAVMGC WELEQSLQSL TGASPGEGTG ATMSDDEDNQ  60
VDSEANMFDG NDGSDGMGFG PLMLTEGERS LVERVRHELK NELKQGYKEK LVDIREEILR  120
KRRAGKLPGD TASILKAWWQ AHSKWPYPTE DDKARLVQET GLQLKQINNW FINQRKRNWH  180
SNPASSGEKT KKKRNVTGDS GAEQSW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A3e-13121185872Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174193RKRNWHSNPASSGEKTKKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB02G15590.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0618170.0AB061817.1 Oryza sativa Japonica Group HOS58 mRNA for KNOX family class 2 homeodomain protein, partial cds.
GenBankAK2433520.0AK243352.1 Oryza sativa Japonica Group cDNA, clone: J100060L07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006646986.11e-153PREDICTED: homeobox protein knotted-1-like 2 isoform X1
RefseqXP_015626237.11e-152homeobox protein knotted-1-like 2 isoform X1
SwissprotQ0E3C31e-153KNOS2_ORYSJ; Homeobox protein knotted-1-like 2
TrEMBLJ3LA921e-152J3LA92_ORYBR; Uncharacterized protein
STRINGOB02G15590.11e-153(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56438169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-122KNOTTED1-like homeobox gene 3