PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB02G16260.1
Common NameLOC102713603
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 172aa    MW: 19388.9 Da    PI: 7.6077
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB02G16260.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_139.31.4e-1280127555
                   CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 
                   ++ rr+ +NRe+ArrsR RK+ +++eL   v eL   N++L  el++   +
  OB02G16260.1  80 RKKRRLVSNRESARRSRVRKQRRLDELSSQVSELRDTNQRLLVELNH---M 127
                   6789*************************************966655...4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.5E-776140IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.86478141IPR004827Basic-leucine zipper domain
PfamPF001702.7E-980126IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1708.5E-1080153No hitNo description
SuperFamilySSF579591.29E-1080130No hitNo description
PROSITE patternPS0003608398IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MQHDAMANIA CHPSMDFTSF FLSQNDTCLQ DFSTVLDMGD PSYICNGIGI GSGSSITMSS  60
VPADEANIQI QVMGHGNNER KKRRLVSNRE SARRSRVRKQ RRLDELSSQV SELRDTNQRL  120
LVELNHMIAK HARIVRENAQ LREEASHLQK RLSEMELEEA EVAAAPRILK VA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19298RRSRVRK
29299RRSRVRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB02G16260.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0057851e-100AP005785.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0453H10.
GenBankAP0149581e-100AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankBT1293471e-100BT129347.1 Oryza sativa clone RRlibA00066 mRNA sequence.
GenBankBT1293891e-100BT129389.1 Oryza sativa clone RRlibA00076 mRNA sequence.
GenBankCP0126101e-100CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
GenBankCT8353621e-100CT835362.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI022L05, full insert sequence.
GenBankCT8353651e-100CT835365.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI025K13, full insert sequence.
GenBankCU4069131e-100CU406913.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C002J11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015689193.11e-125PREDICTED: basic leucine zipper 1-like
TrEMBLJ3LAF91e-123J3LAF9_ORYBR; Uncharacterized protein
STRINGOB02G16260.11e-124(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127422735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30530.19e-11basic leucine-zipper 42