PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB02G16470.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 230aa    MW: 23815.2 Da    PI: 9.9155
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB02G16470.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.64.4e-083257227
                  -S---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                  kt+lC+ +     Ck Gd+C+FaHg+
  OB02G16470.1 32 KTRLCNKYNTAEGCKWGDKCHFAHGE 57
                  8***********************96 PP
2zf-CCCH35.32e-11196221127
                   --S---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                   +kt+lC +f + G C +GdrC+FaHg+
  OB02G16470.1 196 FKTKLCENFTK-GSCTFGDRCHFAHGE 221
                   69*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.7E-142862IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.26E-82961IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.0753058IPR000571Zinc finger, CCCH-type
SMARTSM003560.0693057IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-53257IPR000571Zinc finger, CCCH-type
SuperFamilySSF547911.98E-1490170IPR004088K Homology domain, type 1
SMARTSM003222.3E-999169IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.101.7E-14100168IPR004088K Homology domain, type 1
PROSITE profilePS5008414.55100164IPR004088K Homology domain, type 1
CDDcd001051.97E-13102164No hitNo description
PfamPF000139.2E-11102166IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.101.2E-16193226IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.009195222IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-9195225IPR000571Zinc finger, CCCH-type
SMARTSM003566.2E-8195221IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-9196221IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MTNLGGPALA PPPGRMPMGT AVPDGLPTPT VKTRLCNKYN TAEGCKWGDK CHFAHGEREL  60
GKPMLDSSMP PSMGPRPTGH FALPPMPNPG MSTPASFGAS ATAKISVDAS LAGGIIGRGG  120
VNTKQISRVT GAKLAIRDHE SDANLKNIEL EGTFDQIKNA SAMVRELIVS IGGGAPPQGK  180
KPTGGSHRGG GPGSNFKTKL CENFTKGSCT FGDRCHFAHG ENELRKSAAA
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB02G16470.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2423410.0AK242341.1 Oryza sativa Japonica Group cDNA, clone: J075199P17, full insert sequence.
GenBankAP0003660.0AP000366.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0437H03.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCT8353830.0CT835383.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA106D07, full insert sequence.
GenBankCT8353840.0CT835384.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA106E07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006648412.21e-167PREDICTED: zinc finger CCCH domain-containing protein 14
SwissprotQ7F8R01e-141C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLJ3LAI01e-167J3LAI0_ORYBR; Uncharacterized protein
STRINGOB02G16470.11e-167(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125438127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.14e-56C3H family protein