PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB02G16610.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 237aa    MW: 24306.6 Da    PI: 7.4423
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB02G16610.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.00013165181117
                   EEETTTTEEESSHHHHH CS
       zf-C2H2   1 ykCpdCgksFsrksnLk 17 
                   ++C+ C+k+F+r  nL+
  OB02G16610.1 165 FSCSVCHKTFNRYNNLQ 181
                   89***********9997 PP
2zf-C2H2140.00015215231117
                   EEETTTTEEESSHHHHH CS
       zf-C2H2   1 ykCpdCgksFsrksnLk 17 
                   ++C+ C+k+F+r  nL+
  OB02G16610.1 215 FSCSVCHKTFNRYNNLQ 231
                   89************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF486956.91E-5123223IPR011031Multihaem cytochrome
PfamPF139120.0047165180IPR007087Zinc finger, C2H2
PfamPF139120.0047215230IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MEDARTSNLR ISRGHGHGCQ PSSVKEPFPF LSLIASSSPS SSSSSRHQQQ EGRGGHDQLL  60
QYACLSGEHQ YREEEEEVTV ALSIGLPVIS SSSPSSSVAP ATKLANQDGG GTCAGGGGGE  120
EGTGGDGVSC SGGVGPAVGS VRTAGGGGQY WIPTAAQILA GATQFSCSVC HKTFNRYNNL  180
QIDSGPGGGS VRTAGGGGQY WIPTAAQILA GATQFSCSVC HKTFNRYNNL QQPRVTR
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB02G16610.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1087291e-38AK108729.1 Oryza sativa Japonica Group cDNA clone:002-150-D01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624987.22e-20zinc finger protein WIP5
TrEMBLJ3LAJ41e-170J3LAJ4_ORYBR; Uncharacterized protein
STRINGOB02G16610.11e-171(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5229322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-13C2H2 family protein