PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB02G18580.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 197aa    MW: 20242.4 Da    PI: 10.0934
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB02G18580.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH162.2e-051469653
                  HHHHHHHHHHHHHHHHHHHCTSCCC..........TTS-.STCHHHHHHHHHHHHH CS
           HLH  6 nerErrRRdriNsafeeLrellPkas.......kapskK.lsKaeiLekAveYIks 53
                  + +Er+RR+ +N+ ++ L +l+ +         +++++   +  + L +A eYI+ 
  OB02G18580.1 14 KTVERNRRNPMNELYSHLDSLVRSGGgaappapAGGAPSaTTRPDKLGEAAEYIRR 69
                  679*******************8854477777755555557777778888888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.63E-71390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-61388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.0055141194No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0050832Biological Processdefense response to fungus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MPPSGSGGAK PDRKTVERNR RNPMNELYSH LDSLVRSGGG AAPPAPAGGA PSATTRPDKL  60
GEAAEYIRRQ EERLGALREK RQELSAAAAA AHQLGGGGGG SSSPGXXXXX ATPPKVEVQH  120
LGSGLHAILV TGAPPSDGAS FHRAVRAVQE AGGQVQNAHF SVVGAMAVYT IHALVGEGYG  180
GIERVVQRLK EAIRGDA
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB02G18580.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0057562e-68AP005756.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBb0035N08.
GenBankAP0149582e-68AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015688523.11e-132PREDICTED: uncharacterized protein LOC107303503
TrEMBLJ3LB411e-131J3LB41_ORYBR; Uncharacterized protein
STRINGOB02G18580.11e-132(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119872938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.14e-18bHLH family protein