PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB02G19030.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 563aa    MW: 60220.7 Da    PI: 5.3948
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB02G19030.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.11.5e-31128181255
       G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                   prlrWtp+LH +Fv+ave+LGG+e+AtPk +l++m+v gL+++hvkSHLQ+YR+
  OB02G19030.1 128 PRLRWTPDLHMAFVHAVERLGGQERATPKLVLQMMNVRGLSIAHVKSHLQMYRS 181
                   8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.627124184IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-29124182IPR009057Homeodomain-like
SuperFamilySSF466894.84E-14126182IPR009057Homeodomain-like
TIGRFAMsTIGR015573.6E-22128183IPR006447Myb domain, plants
PfamPF002491.0E-8129180IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 563 aa     Download sequence    Send to blast
MKDKEVVAEI VEDDDEETKR PVEKNRLDLN EVVMDVESEE GEVGDDDEDD DGEDEEDEGD  60
DDDDDGGSTT DVAGSRSSSN NSSTNNHVSE SKLKGDKDHG GGGGGKSEGN GGEQRVPSVR  120
QYNRSKMPRL RWTPDLHMAF VHAVERLGGQ ERATPKLVLQ MMNVRGLSIA HVKSHLQMYR  180
SKKLDHEGRQ IRGSIASVFS PMDFHLTRGD RRFHDMLLQR AAALSSRPPE HGGFFASRSG  240
GGGGGGGGGA LPEQASRLYG LLQHRQSPAS SQTFDFKNSS FRNQEWSFSF NQREVIKPSS  300
SSTTAAAHLF ASSSATRRWP PSTDAGDHRQ MVDGRFGYYA GNGASSTRPQ LIARSAAMAP  360
PATMLAAAAV TAGRDHRFPF GWHSGGGGGG GGCYDPAAST VAGGGGRNRS SSDPVVIDEA  420
LDSRRLEQKH AEPTTTMTPA TTPSGKRPPE WAAPDLQLSL SPTTMAAGAA KRSKTTPPTT  480
STTVSEQEAQ MDRRSNKLSI SLSLSPPAAA AAAANSSMDS SMAQQQQQQQ KQEKTTIESS  540
EEASDDDLGQ STLDLTMSIR ALE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A4e-18129183357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-18129183357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-18129183357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-18129183357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB02G19030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006648492.10.0PREDICTED: uncharacterized protein LOC102717409
TrEMBLJ3LB860.0J3LB86_ORYBR; Uncharacterized protein
STRINGOB02G19030.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27543686
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.19e-35G2-like family protein