PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB02G20150.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 360aa    MW: 38355 Da    PI: 4.6852
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB02G20150.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.73.7e-31182240259
                   --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                    D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers++dp++++ tY+geHnh+
  OB02G20150.1 182 ADVWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRSDPNTFILTYTGEHNHS 240
                   69*************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.2E-32167242IPR003657WRKY domain
PROSITE profilePS5081133.832176242IPR003657WRKY domain
SuperFamilySSF1182901.83E-26179242IPR003657WRKY domain
SMARTSM007742.1E-37181241IPR003657WRKY domain
PfamPF031064.5E-26183239IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010150Biological Processleaf senescence
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MEEELWGSNN WDLDAVVRLG CCRRRVSAAA QQQQVDPFEP FLVAQQQAQL GVMVEAAKEE  60
LGAGVDAGWS FPDLAVRDGG GGLGRDADEL LKAFCAAFPS PSSSLPTAAP APAPPPEQPK  120
EEEEEKKRKP VLVQENQPVQ AAAPARAPAA VRQVPGGVPR SKRRKNQQKK VVRHVPADGV  180
SADVWAWRKY GQKPIKGSPY PRGYYRCSSS KGCPARKQVE RSRSDPNTFI LTYTGEHNHS  240
APTHRNSLAX XXPPPPPGVG VAGADAAHHP SPAASTSPAG LSPTTPLRTP SMEEDEEEDD  300
ELLVEDMEMA GEDELLFLNG GGDDTAALDG TPMSSLFDID DPFLPAPWTE PAAAPAAAGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-19165243280Disease resistance protein RRS1
5w3x_D1e-19165243280Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00422DAPTransfer from AT4G01250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB02G20150.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0667751e-131AK066775.1 Oryza sativa Japonica Group cDNA clone:J013074N21, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015689079.10.0PREDICTED: LOW QUALITY PROTEIN: probable WRKY transcription factor 27
TrEMBLJ3LBJ80.0J3LBJ8_ORYBR; Uncharacterized protein
STRINGOB02G20150.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53583361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.18e-41WRKY family protein