PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB02G20370.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family FAR1
Protein Properties Length: 156aa    MW: 17379.4 Da    PI: 4.8316
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB02G20370.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR122.73.3e-07761204788
          FAR1  47 k....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                   k    +++e +++++tr +C ak++  ++  +k+++++l l+HnH+
  OB02G20370.1  76 KalytSTNEFKPNPSTRQQCPAKVNFYLH-GEKFCISTLTLDHNHA 120
                   24444677889*****************9.9**************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MEFRSAFCAA LLLVIVHSLH LSANASTEVM DTNLCSDDEQ DHIISDEDEF AVEEVDSDSR  60
TLVADKTKLL EPAKGKALYT STNEFKPNPS TRQQCPAKVN FYLHGEKFCI STLTLDHNHA  120
GFQSNHPAQP SHISSYMDLL QGKGDLTELL SQHMKE
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB02G20370.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1369982e-51AC136998.2 Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0082P17, complete sequence.
GenBankAP0149672e-51AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLJ3LBM01e-112J3LBM0_ORYBR; Uncharacterized protein
STRINGOB02G20370.11e-113(Oryza brachyantha)