PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB02G23600.1
Common NameLOC102721713
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 259aa    MW: 29065.2 Da    PI: 9.5191
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB02G23600.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.11.7e-1429127194
                   EEEE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS.............-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
            B3   1 ffkvltpsdvlks.grlvlpkkfaeehggkkeesktltledesg.............rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                   f kvl+psdv+    +lv+p ++a + +++       +++d++g             + W++++  +++ + + lt+GW  +vk++gL +gD + F 
  OB02G23600.1  29 FGKVLMPSDVFWVtEQLVIPDEHAGKLDIV------TKVKDREGffvimamdgmvpgKLWRFRY--WNHNSIHRLTSGWGCYVKEKGLTAGDAISFF 117
                   6799******975589********888433......444555555555555556777*******..****9*************************9 PP

                   E-SSSEE..EE CS
            B3  84 ldgrsefelvv 94 
                   + g+++++l++
  OB02G23600.1 118 H-GTTCGRLFI 127
                   5.447776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.9E-1425140IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.01E-1427125IPR015300DNA-binding pseudobarrel domain
CDDcd100176.67E-1428128No hitNo description
PfamPF023627.8E-1129127IPR003340B3 DNA binding domain
PROSITE profilePS508638.9830133IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
METSLPLPAS IDGVEVLDDM KVVATKYLFG KVLMPSDVFW VTEQLVIPDE HAGKLDIVTK  60
VKDREGFFVI MAMDGMVPGK LWRFRYWNHN SIHRLTSGWG CYVKEKGLTA GDAISFFHGT  120
TCGRLFISCN CKRDTRTGSS SATMSHPRNE GSMPVRSRNV TSKFGGAGAQ HSRRSPRHRR  180
RSLVHPEQEP TDMPPILESM TLVPTPPPTV KRVRLFGVYI DAPPPLSFDD EPNQESNSHC  240
GRAIDRDTDL KKRRQARGD
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB02G23600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006648609.10.0PREDICTED: putative B3 domain-containing protein Os02g0455900
SwissprotQ6K3B13e-70Y2559_ORYSJ; Putative B3 domain-containing protein Os02g0455900
TrEMBLJ3LCJ30.0J3LCJ3_ORYBR; Uncharacterized protein
STRINGOB02G23600.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151591316
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01500.11e-14B3 family protein