PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB02G24180.1

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

WRKY

Protein Properties

Length: 111aa MW: 12326.8 Da PI: 10.109

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB02G24180.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98.3	4.8e-31	41	98	2	58
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 Dgy+WrKYGqK++kgs++pr+YY+C++a gCp++k+ver+ +p ++++tY g+H+h OB02G24180.1 41 ADGYSWRKYGQKPIKGSPYPRGYYKCSTAhGCPARKHVERDPGEPAMLIVTYDGDHRH 98 6***********************9998*************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	2.3E-6	17	38	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	8.6E-33	27	101	IPR003657	WRKY domain
PROSITE profile	PS50811	31.112	35	101	IPR003657	WRKY domain
SuperFamily	SSF118290	6.8E-27	36	101	IPR003657	WRKY domain
SMART	SM00774	1.3E-35	40	100	IPR003657	WRKY domain
Pfam	PF03106	8.9E-27	42	98	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 111 aa Download sequence Send to blast
MHELRWPAAG RTDGGCRKAS WRARRRIRVP AISSRNADIP ADGYSWRKYG QKPIKGSPYP 60 RGYYKCSTAH GCPARKHVER DPGEPAMLIV TYDGDHRHGE PVAGGAQDDA V

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	2e-22	28	101	2	74	WRKY transcription factor 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts, when in complex with WRKY71, specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Represses specifically gibberellic acid (GA)-induced promoters in aleurone cells, probably by interfering with GAM1. {ECO:0000250\|UniProtKB:Q0JEE2}.
UniProt	Transcription factor. Interacts, when in complex with WRKY71, specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Represses specifically gibberellic acid (GA)-induced promoters in aleurone cells, probably by interfering with GAM1. {ECO:0000269\|PubMed:16623886}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB02G24180.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by abscisic acid (ABA) in aleurone cells (By similarity) (PubMed:15618416). Accumulates in response to uniconazole, a gibberellic acid (GA) biosynthesis inhibitor (By similarity). Repressed by GA (PubMed:15618416). {ECO:0000250\|UniProtKB:Q0JEE2, ECO:0000269\|PubMed:15618416}.
UniProt	INDUCTION: Induced by abscisic acid (ABA) in aleurone cells (PubMed:15618416, PubMed:16623886). Accumulates in response to uniconazole, a gibberellic acid (GA) biosynthesis inhibitor (PubMed:16623886). Repressed by GA (PubMed:15618416). {ECO:0000269\|PubMed:15618416, ECO:0000269\|PubMed:16623886}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK110587	1e-114	AK110587.1 Oryza sativa Japonica Group cDNA clone:002-168-F03, full insert sequence.
GenBank	AY676923	1e-114	AY676923.1 Oryza sativa (indica cultivar-group) transcription factor WRKY42 (WRKY42) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015624842.1	3e-53	WRKY transcription factor WRKY51-like
Swissprot	Q0JEE2	2e-41	WRK51_ORYSJ; WRKY transcription factor WRKY51
Swissprot	Q6IEN1	2e-41	WRK51_ORYSI; WRKY transcription factor WRKY51
TrEMBL	J3LCQ1	5e-75	J3LCQ1_ORYBR; Uncharacterized protein
STRING	OB02G24180.1	9e-76	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP617	38	171

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31550.1	7e-34	WRKY DNA-binding protein 11

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Zhang Y,Wang L The WRKY transcription factor superfamily: its origin in eukaryotes and expansion in plants. BMC Evol. Biol., 2005. 5: p. 1 [PMID:15629062] Wu KL,Guo ZJ,Wang HH,Li J The WRKY family of transcription factors in rice and Arabidopsis and their origins. DNA Res., 2005. 12(1): p. 9-26 [PMID:16106749] Xie Z, et al. Interactions of two abscisic-acid induced WRKY genes in repressing gibberellin signaling in aleurone cells. Plant J., 2006. 46(2): p. 231-42 [PMID:16623886] Yilmaz A, et al. GRASSIUS: a platform for comparative regulatory genomics across the grasses. Plant Physiol., 2009. 149(1): p. 171-80 [PMID:18987217] Zhang ZL, et al. A negative regulator encoded by a rice WRKY gene represses both abscisic acid and gibberellins signaling in aleurone cells. Plant Mol. Biol., 2009. 70(1-2): p. 139-51 [PMID:19199048] Hwang SH, et al. OsWRKY51, a rice transcription factor, functions as a positive regulator in defense response against Xanthomonas oryzae pv. oryzae. Plant Cell Rep., 2016. 35(9): p. 1975-85 [PMID:27300023]