PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB02G25780.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 154aa    MW: 16888.4 Da    PI: 11.4466
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB02G25780.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.21.8e-135396447
                     S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     W++ E+ +++++ ++ G+g Wkt ar++ k++++ q+ s++qk+
     OB02G25780.1 53 WSAHEHSQFLRGLEKCGKGKWKTMAREFVKTKSPIQIASHYQKF 96
                     ******************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.27845101IPR017930Myb domain
SuperFamilySSF466892.5E-1346101IPR009057Homeodomain-like
TIGRFAMsTIGR015574.1E-104898IPR006447Myb domain, plants
SMARTSM007173.6E-74999IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-95297IPR009057Homeodomain-like
PfamPF002492.0E-85395IPR001005SANT/Myb domain
CDDcd001674.61E-75396No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MAPAGGGQAA APIEAARRAA APALTSGMVR SKPRKPRSRR MSGGAPRKKA EMWSAHEHSQ  60
FLRGLEKCGK GKWKTMAREF VKTKSPIQIA SHYQKFCIRE ESRRLNQCKR TSIHDITEPT  120
TPAPETTPAA ATAAVVNFGT GNDLAFQRRY QAIN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13648RSRRMSGGAPRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB02G25780.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015688608.15e-93PREDICTED: transcription factor DIVARICATA-like
TrEMBLJ3LD611e-109J3LD61_ORYBR; Uncharacterized protein
STRINGOB02G25780.11e-110(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144181825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.18e-19MYB family protein