PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB02G26200.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 237aa    MW: 26651.1 Da    PI: 10.827
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB02G26200.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.91.3e-183282155
           AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                  ++y GVr+++ +gr++AeIrdp +   + r++lg+f+taeeAa a+++a+++++g
  OB02G26200.1 32 TRYLGVRRRP-WGRYAAEIRDPAT---KERHWLGTFDTAEEAAIAYDRAARAIRG 82
                  5799******.**********843...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.26E-253291No hitNo description
SMARTSM003805.3E-333396IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.0E-293390IPR001471AP2/ERF domain
PROSITE profilePS5103221.3383390IPR001471AP2/ERF domain
SuperFamilySSF541713.14E-213390IPR016177DNA-binding domain
PfamPF008474.5E-113382IPR001471AP2/ERF domain
PRINTSPR003671.1E-83445IPR001471AP2/ERF domain
PRINTSPR003671.1E-85672IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MEFYFFSSAS APEKKTKRRQ QQQESGGGGN ETRYLGVRRR PWGRYAAEIR DPATKERHWL  60
GTFDTAEEAA IAYDRAARAI RGASARTNFA YPDLPPGSSV TPYLSPDLSA DDLQLQLQQQ  120
HCCYGGGGDK AXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  180
XXXXXXXXXX GTATRARRRP TGCTSRRGTC TARCSRRCPR PTRSSTGSSS AGRRPRI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1826100781Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00163DAPTransfer from AT1G28160Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB02G26200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126101e-100CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLJ3LDA33e-97J3LDA3_ORYBR; Uncharacterized protein
STRINGOB02G26200.15e-98(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18853397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.17e-24ERF family protein