PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB02G27530.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 151aa    MW: 15591.1 Da    PI: 10.2406
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB02G27530.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH438.4e-1484133255
                   HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    r+h  +Er RR++i++ f  Lrel+P++      K +Ka+i+ +A+ +I+ L+
  OB02G27530.1  84 ERMHIFAERERRRKIKNMFTDLRELVPSL----TSKADKASIVGEAISFIRGLE 133
                   578999**********************9....69****************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.29E-1679144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.00282132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.89E-1382136No hitNo description
PfamPF000103.5E-1185133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-1586145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-1188138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MAKEGTSNGG APPAANVNSM VSGGDNNNEG TGDSQAGNLQ PAADKGKGVD EGGSNGKSTA  60
TAAAAAASST NGRAAGGGGG RSRERMHIFA ERERRRKIKN MFTDLRELVP SLTSKADKAS  120
IVGEAISFIR GLEETVTDLE RRKRERDSLT A
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB02G27530.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0056111e-46AP005611.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0051E21.
GenBankAP0149581e-46AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878857.13e-51transcription factor bHLH95
TrEMBLJ3LDN61e-102J3LDN6_ORYBR; Uncharacterized protein
STRINGOB02G27530.11e-102(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20053691
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.15e-17bHLH family protein