PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB02G27960.1
Common NameLOC102715821
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 205aa    MW: 22706.3 Da    PI: 6.7308
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB02G27960.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM106.63.1e-3381251128
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                   lppGf+F P+deelvv++L++kv+  +++  ++i+++  ++++Pw+L+ k+ +  ++wyfF++  +        +ra +sg W+  g d++v s +g
  OB02G27960.1   8 LPPGFHFFPSDEELVVHFLRRKVSLLPCHP-DIIPTLLPHRYNPWELNGKALQAGNQWYFFCHLTQ--------SRASSSGHWNPIGADETVRS-GG 94 
                   79*************************999.89**************966667789******9854........68899**************9.99 PP

           NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                   + vglkktL f  g+ ++g++t+W+mhey+l
  OB02G27960.1  95 RSVGLKKTLLFSIGEPSEGVRTNWIMHEYHL 125
                   *****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-455168IPR003441NAC domain
PROSITE profilePS5100541.1488169IPR003441NAC domain
PfamPF023653.8E-219125IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010089Biological Processxylem development
GO:0043067Biological Processregulation of programmed cell death
GO:0048367Biological Processshoot system development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MGGGATNLPP GFHFFPSDEE LVVHFLRRKV SLLPCHPDII PTLLPHRYNP WELNGKALQA  60
GNQWYFFCHL TQSRASSSGH WNPIGADETV RSGGRSVGLK KTLLFSIGEP SEGVRTNWIM  120
HEYHLLDGDC INGGSSNSTG SSSNRKSHRK RGHSSMESNS WVLCRVFESS CGSQVSFHGE  180
GTELSCLDEV FLSLDDYDEV SLPNK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-33717419173NAC domain-containing protein 19
3swm_B2e-33717419173NAC domain-containing protein 19
3swm_C2e-33717419173NAC domain-containing protein 19
3swm_D2e-33717419173NAC domain-containing protein 19
3swp_A2e-33717419173NAC domain-containing protein 19
3swp_B2e-33717419173NAC domain-containing protein 19
3swp_C2e-33717419173NAC domain-containing protein 19
3swp_D2e-33717419173NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB02G27960.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1084540.0AK108454.1 Oryza sativa Japonica Group cDNA clone:002-143-C12, full insert sequence.
GenBankCT8313770.0CT831377.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRN119H17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006647372.11e-151PREDICTED: NAC transcription factor 29-like isoform X2
SwissprotQ8GWK61e-60NC104_ARATH; NAC domain-containing protein 104
TrEMBLJ3LDS91e-150J3LDS9_ORYBR; Uncharacterized protein
STRINGOB02G27960.11e-150(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36673679
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.19e-62xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]