PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB02G28530.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 345aa    MW: 36804.3 Da    PI: 6.1829
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB02G28530.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.21.2e-12155200555
                   HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   h+++Er RR++i +++  L+el+P++      K +Ka++L + ++Y+k Lq
  OB02G28530.1 155 HSIAERLRREKISDRMKDLQELVPNS-----NKTNKASMLDEIIDYVKFLQ 200
                   99***********************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.28E-12148204No hitNo description
SuperFamilySSF474591.96E-17148211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.06150199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-17152210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.9E-10155200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-13156205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MAGEETHQSF GFGRLSNGDL LQEADGSKYQ QLLGAGRSSS QLLLHDDIDF DSGKLLSFAP  60
GQQVTPCIDS LQVDQKEFSG LHHLNLSSLM SGSLASFNAT QSHRQPTEAR SDKNDSAAPF  120
VNLSEVLPNG NGGSAGNGAP KPRVRARRGQ ATDPHSIAER LRREKISDRM KDLQELVPNS  180
NKTNKASMLD EIIDYVKFLQ LQVKVLSMSR LGAAEAVVPL LTESQTESSG LLLSPRSGER  240
QAGAGLLGGG QPELQDGATF EQEVVQLMEN NMTTAMQYLQ SKGLCLMPVA LASAISAQKG  300
TSSAAVRPEK NGGGGGGEEE EEVKGAFHAL RPPPLGRPKE MKSRA
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB02G28530.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2419240.0AK241924.1 Oryza sativa Japonica Group cDNA, clone: J075076G04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015688637.10.0PREDICTED: transcription factor bHLH85-like
TrEMBLJ3LDY60.0J3LDY6_ORYBR; Uncharacterized protein
STRINGOB02G28530.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32543879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.16e-58LJRHL1-like 3