PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB02G30290.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 961aa    MW: 108132 Da    PI: 7.8086
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB02G30290.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.21.9e-102663461399
                   TT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
            B3  13 sgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                   + +l +p   a+++ +++   +  + led++g s ++kl  +  +g+  + +GW++Fv+++ +  gDf++F+++ +s+f   v+vf k
  OB02G30290.1 266 KELLFIPPAVASSFkDLI---NHHVYLEDSEGMSSKIKL--SVVDGSLAFYEGWNKFVSEHFITWGDFLLFEYTAESTF--SVRVFGK 346
                   467999*99999995444...447***************..8888999999**********************998888..8888865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.138254347IPR003340B3 DNA binding domain
CDDcd100177.40E-8255344No hitNo description
SuperFamilySSF1019368.44E-17256349IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-14257348IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.6E-5257347IPR003340B3 DNA binding domain
PfamPF023621.9E-8266344IPR003340B3 DNA binding domain
SMARTSM010190.022811906IPR003340B3 DNA binding domain
SuperFamilySSF1019361.82E-11816891IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-10817890IPR015300DNA-binding pseudobarrel domain
CDDcd100171.40E-11820901No hitNo description
PROSITE profilePS508638.318845907IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 961 aa     Download sequence    Send to blast
MGFRCEEEDV GLAILFLEAN AECGGTGEPN IEPQRQAKLS LDKRDEPCLR DTGDQTGPQE  60
LGQKQKKDEK RRCRDGMKKN APNDAGEGEE TSNRDKRRNR KAGSDAEERE KKMFNGGNKA  120
KSRKVSSPFF EKERKKKMLG MSSHQNGEQK KSNDDSDKKR TVPKVRHNDI MEMTIKEKKQ  180
DVSFVQPEER TSQTFSTNNK GKKRKALSTL FKREQKMREA SSDDKKETKK TRIVAKGNDR  240
KVCSDGKKKK RKASFTFLKF MCNKFKELLF IPPAVASSFK DLINHHVYLE DSEGMSSKIK  300
LSVVDGSLAF YEGWNKFVSE HFITWGDFLL FEYTAESTFS VRVFGKDSCE RLHFNVKSGR  360
KGTMKKRNER YTLSDDLESH YDGQDSEDVH DAPHVSGESL RNKEPKITVA TEIRTSNLAA  420
KSINAASETQ DSERVESGIG HGSVGALDNM DRDVGNIVCK TRSDSVLFIP ETTKRSEVIM  480
IIDESSSTQE NEDTMTQMTS SEDSETRHMT INAKKDPERV PDGVWCKSSV ALNNKTENVF  540
LGECKNKIVS PTCSTEKTNG SETIPITDVI PLTWGNVDTF SHLKEGGSTR EPELAAATPT  600
KCTEIHDSDE DLRQRHQWST VQVKSAIAMD RYSNNSDMDI SGNISRIYEA PGGTRCLEKW  660
NKSIISDRAA LDDIEQPQVR PEELQKADKK LVDNCGAMGQ NSVDPWLESD VTDTCLKPIE  720
NLLILDSRTE IDHFVNQKGA IVQLQTKTEP LKPTGSTGSI QGDKIPVCVN HILAQQSEEI  780
PQQENGKFTS CVIPVALLVS EAKLLDLDDH SLQFRIPSTI QKWLELPKSL PITFRHKGRL  840
DRRVVILKDP MKRLWPVFYH DHPIFVGFTS GWKAFAAAND LQSGDVCKLV KEPDEYEPAF  900
QKIYMAQDWR LGAGTKKLFL LVATCNNSNS AAAGWTPTRL CESRRCRGRP GLAVPLHMCL  960
D
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1246251KKKKRK
2472479TKRSEVIM
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB02G30290.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006647460.10.0PREDICTED: LOW QUALITY PROTEIN: B3 domain-containing protein Os02g0598200-like
SwissprotQ6K5K20.0Y2982_ORYSJ; B3 domain-containing protein Os02g0598200
TrEMBLJ3LEG20.0J3LEG2_ORYBR; Uncharacterized protein
STRINGOB02G30290.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122722730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.15e-11B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]