PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB02G33180.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family DBB
Protein Properties Length: 182aa    MW: 19294.6 Da    PI: 6.6842
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB02G33180.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.26e-07443538
      zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                   C+ +  + ++ fC  ++  lC+ C    H+       H+
  OB02G33180.1  4 QCDVCAAEAASVFCCADEAALCDACDRRVHRAnklagkHR 43
                  7*****************************7677777776 PP
2zf-B_box24.45.8e-085992336
      zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg 36
                  ++ C+ ++ek+  lfC++++  lC++C    H+ 
  OB02G33180.1 59 APLCDICQEKRGFLFCKEDRAILCRECDAPVHST 92
                  689************************9988854 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.84147IPR000315B-box-type zinc finger
SMARTSM003363.6E-10147IPR000315B-box-type zinc finger
CDDcd000219.20E-6347No hitNo description
PfamPF006437.3E-6444IPR000315B-box-type zinc finger
PROSITE profilePS501199.37157104IPR000315B-box-type zinc finger
SMARTSM003363.4E-857104IPR000315B-box-type zinc finger
PfamPF006438.9E-75899IPR000315B-box-type zinc finger
CDDcd000215.25E-76091No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MKVQCDVCAA EAASVFCCAD EAALCDACDR RVHRANKLAG KHRRFSLVNP SASGRSPPAP  60
LCDICQEKRG FLFCKEDRAI LCRECDAPVH STSELTMRHS RPQAPAPATS HGGSSGSSSI  120
SEYLTKTLPG WHVEDFLVDD ATAEAAAATS SGISANGPCQ VGATDRPHSH VAVPVNLEWS  180
NC
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis. Plays a negative role in brassinosteroid responses. {ECO:0000269|PubMed:22535582}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB02G33180.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0715071e-128AK071507.1 Oryza sativa Japonica Group cDNA clone:J023090D24, full insert sequence.
GenBankCT8323051e-128CT832305.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA032L03, full insert sequence.
GenBankHQ8588191e-128HQ858819.1 Oryza sativa Japonica Group isolate UT1236 ORPHANS transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006648883.12e-86PREDICTED: LOW QUALITY PROTEIN: B-box zinc finger protein 20-like
SwissprotQ0IGM72e-40BBX20_ARATH; B-box zinc finger protein 20
TrEMBLJ3LFA11e-130J3LFA1_ORYBR; Uncharacterized protein
STRINGOB02G33180.11e-131(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23923679
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75540.12e-30salt tolerance homolog2
Publications ? help Back to Top
  1. Wei CQ, et al.
    The Arabidopsis B-box protein BZS1/BBX20 interacts with HY5 and mediates strigolactone regulation of photomorphogenesis.
    J Genet Genomics, 2016. 43(9): p. 555-563
    [PMID:27523280]
  2. Thussagunpanit J, et al.
    Involvement of STH7 in light-adapted development in Arabidopsis thaliana promoted by both strigolactone and karrikin.
    Biosci. Biotechnol. Biochem., 2017. 81(2): p. 292-301
    [PMID:27858514]