PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB02G33650.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 190aa    MW: 20433.4 Da    PI: 4.4833
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB02G33650.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.93.9e-16144186247
           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaai 47 
                   +y+GVr+++ +g+++AeIrdp +ng  +r++lg+f++aeeAa a +
  OB02G33650.1 144 HYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTFDSAEEAAVAFD 186
                   8********.***********9987..***************8866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.23E-20143186No hitNo description
Gene3DG3DSA:3.30.730.106.8E-23143187IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-16144187IPR016177DNA-binding domain
PfamPF008479.3E-10144182IPR001471AP2/ERF domain
PROSITE profilePS5103219.348144190IPR001471AP2/ERF domain
SMARTSM003802.4E-16144190IPR001471AP2/ERF domain
PRINTSPR003676.8E-11145156IPR001471AP2/ERF domain
PRINTSPR003676.8E-11168184IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MLLNPASEAT ALESIRHHLL EEETPAPAPA RRPVYCRSSS FGSLVADQWS ESLPFRPNDA  60
EDMVVYGALR DAFSSGWLPD GSFAAVKPES PDSYDGSSIG SFLASSSGPE TPGEVTSTEE  120
AMTPGREEAE GEGEAVAVAS RGKHYRGVRQ RPWGKFAAEI RDPAKNGARV WLGTFDSAEE  180
AAVAFDHLKY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-24140190151ATERF1
3gcc_A6e-24140190151ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB02G33650.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3076620.0AJ307662.1 Oryza sativa genomic DNA fragment, chromosome 2.
GenBankAK1059400.0AK105940.1 Oryza sativa Japonica Group cDNA clone:001-205-B11, full insert sequence.
GenBankAP0046760.0AP004676.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1003_B06.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankAY8313940.0AY831394.1 Oryza sativa (indica cultivar-group) BTH-induced ERF transcriptional factor 3 (BIERF3) mRNA, complete cds.
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015689401.11e-120PREDICTED: LOW QUALITY PROTEIN: ethylene-responsive transcription factor 1-like
TrEMBLJ3LFE81e-134J3LFE8_ORYBR; Uncharacterized protein
STRINGOB02G33650.11e-135(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38002972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.12e-39ethylene responsive element binding factor 1