PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB02G33670.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 254aa    MW: 26839.7 Da    PI: 4.6904
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB02G33670.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.89.4e-12851201956
           AP2  19 IrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                   Irdp+++g   r++lg+++ta eAa+a+++a+ +++g+
  OB02G33670.1  85 IRDPKKRG--SRVWLGTYDTAIEAARAYDRAAFRMRGA 120
                   89998876..**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103216.63467127IPR001471AP2/ERF domain
SMARTSM003806.2E-1767133IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-1385128IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.5E-2085128IPR001471AP2/ERF domain
CDDcd000186.90E-1985128No hitNo description
PfamPF008471.2E-789119IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MDSSGNIDDF SLQLIHELLL GPDACLPVAQ EHGAAYAEQQ GFQPAAAFLH QQQPTMLAGY  60
MDLGNDQYMG VAAGEAAFRA AGEPIRDPKK RGSRVWLGTY DTAIEAARAY DRAAFRMRGA  120
KAILNFPNEV GSRGADFLAP PPPPPHGKRK RHETAADPDV EVIGDGDSSK SVKTEAYPSP  180
ANSSLASTTT TSTVTSSSTS PSPSSEAAAS GGGGELFVPL TPSSWAWEQW ECFFGSLSPL  240
SPHPQMGFPE VTVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-16851322168ATERF1
3gcc_A4e-16851322168ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB02G33670.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0046761e-115AP004676.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1003_B06.
GenBankAP0050061e-115AP005006.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0519E06.
GenBankAP0149581e-115AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006648898.11e-153PREDICTED: ethylene-responsive transcription factor ERF094
TrEMBLJ3LFF00.0J3LFF0_ORYBR; Uncharacterized protein
STRINGOB02G33670.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.13e-12ethylene responsive element binding factor 5