PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB02G33960.1

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 229aa MW: 24118.8 Da PI: 5.1381

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB02G33960.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.9	0.00016	152	174	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C ++Fs+ L H r+H OB02G33960.1 152 HECPYCYRVFSSGQALGGHKRSH 174 79******************999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.078	4	31	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.096	4	26	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	7.95E-8	5	26	No hit	No description
Pfam	PF13894	2.7E-4	5	26	No hit	No description
PROSITE pattern	PS00028	0	6	26	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	7.95E-8	147	174	No hit	No description
Pfam	PF13912	6.9E-13	152	174	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.39	152	174	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.2	152	174	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	154	174	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MPKNACKLCC RRFASPRALA GHMRSHSVAT ANAAAAAAVA PATKLQISSA SSASTSFPAA 60 DEEEEEDVGF KKPLSIYTLR ENPKRSLRVS EYAFSDRESE AESTPTPAAK SARTGDGEPM 120 SSLSYVGTPE EEPPLPEHEA DEEDMDGKAV PHECPYCYRV FSSGQALGGH KRSHLCSAAA 180 AAAHAQTAGA SPPSQAKILG MIDLNIAPPV DEVELSAVSD PHFPNNPCL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB02G33960.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK064694	1e-105	AK064694.1 Oryza sativa Japonica Group cDNA clone:002-116-F05, full insert sequence.
GenBank	AP005072	1e-105	AP005072.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0708H12.
GenBank	AP014958	1e-105	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006648909.1	1e-114	PREDICTED: zinc finger protein ZAT1-like
TrEMBL	J3LFH9	1e-164	J3LFH9_ORYBR; Uncharacterized protein
STRING	OB02G33960.1	1e-165	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3518	33	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60580.1	7e-12	C2H2-like zinc finger protein