PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB02G35380.1
Common NameLOC102715544
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 406aa    MW: 43488.5 Da    PI: 9.4602
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB02G35380.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B396.22.1e-3098198195
                   EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE. CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefe 91 
                   f+kv tpsdv+k++rlv+pk++ae++    +  +e++  l +ed+ g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+  + +
  OB02G35380.1  98 FDKVVTPSDVGKLNRLVIPKQYAEKYfpldSAANEKGLLLNFEDRAGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFSRGvGEaARHR 194
                   89***************************955556889*************************************************5435555555 PP

                   .EEE CS
            B3  92 lvvk 95 
                   l++ 
  OB02G35380.1 195 LFID 198
                   5555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.4E-4191204IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.45E-2995202IPR015300DNA-binding pseudobarrel domain
CDDcd100179.92E-2696185No hitNo description
SMARTSM010193.5E-2298199IPR003340B3 DNA binding domain
PROSITE profilePS5086314.59398201IPR003340B3 DNA binding domain
PfamPF023628.8E-2898201IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MEFTTSSRFS KEEDEEQDEP SRREIPFMTA TTTAAEAAPA PTSSSSSPAH AASASASASV  60
SASGRSPPFR SEDGAGASGS GGGGGGGEAE AVEKEHMFDK VVTPSDVGKL NRLVIPKQYA  120
EKYFPLDSAA NEKGLLLNFE DRAGKPWRFR YSYWNSSQSY VMTKGWSRFV KEKRLDAGDT  180
VSFSRGVGEA ARHRLFIDWK RRADTRDQLR LPRGLPLPMP LTSHYAPWGL GGGGGFFVPP  240
SPPATLYEHR LRQGLDFRTF NHPAAPMGRQ VLLFGSARIP PQAPLLARAP SPLHYTLQPS  300
GVDGVRAAGS PVVLDSVPVI ESPTTTAKRV RLFGVNLDNP HGGGAGESSN HGNALSLQTT  360
PAWMRRDPTL RLLELPPHGA ESSAASSPSS SSSSKRDAHS ALDLDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-61932023113B3 domain-containing transcription factor NGA1
5os9_B1e-61932023113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB02G35380.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1099080.0AK109908.1 Oryza sativa Japonica Group cDNA clone:002-149-G07, full insert sequence.
GenBankAP0041780.0AP004178.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1123_G04.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015689086.10.0PREDICTED: B3 domain-containing protein Os02g0683500
RefseqXP_015689087.10.0PREDICTED: B3 domain-containing protein Os02g0683500
SwissprotQ6EU300.0Y2835_ORYSJ; B3 domain-containing protein Os02g0683500
TrEMBLJ3LFX10.0J3LFX1_ORYBR; Uncharacterized protein
STRINGOB02G35380.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.11e-63B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]