PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB02G35920.1
Common NameLOC102700119
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 354aa    MW: 37566.8 Da    PI: 4.5336
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB02G35920.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.98.7e-171663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT++Ed +lv +++++G  +W++ ++  g+ R++k+c++rw +yl
     OB02G35920.1 16 RGSWTPQEDMRLVAYIQKHGHANWRALPKQAGLLRCGKSCRLRWINYL 63
                     89******************************99************97 PP
2Myb_DNA-binding53.17.1e-1769114148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T+eE+e +++++ +lG++ W++Ia++++ gRt++++k+ w+++l
     OB02G35920.1  69 RGNFTAEEEETIIKLHGLLGNK-WSKIASCLP-GRTDNEIKNVWNTHL 114
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.1961163IPR017930Myb domain
SuperFamilySSF466895.24E-3013110IPR009057Homeodomain-like
SMARTSM007171.9E-121565IPR001005SANT/Myb domain
PfamPF002494.8E-151663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-231770IPR009057Homeodomain-like
CDDcd001674.65E-101863No hitNo description
PROSITE profilePS5129424.61264118IPR017930Myb domain
SMARTSM007176.3E-1568116IPR001005SANT/Myb domain
PfamPF002495.9E-1569114IPR001005SANT/Myb domain
CDDcd001672.48E-1171114No hitNo description
Gene3DG3DSA:1.10.10.604.8E-2671117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MGRGRAPCCA KVGLNRGSWT PQEDMRLVAY IQKHGHANWR ALPKQAGLLR CGKSCRLRWI  60
NYLRPDLKRG NFTAEEEETI IKLHGLLGNK WSKIASCLPG RTDNEIKNVW NTHLKKRASQ  120
REQQQQKPGA TKSKDKAVDT SDADTHSPSS SASSSSTTTA NNNGSSSGEQ CGTSREPETV  180
DVSLLEPEID IADMLLVDDA PTEALLAAPM PPSPCSSSSL TTTACIGAVS DDELLDLPEI  240
DIEPEIWSII DGYGGAPVAA GAGDATVPCT TTANAASASP GEEGAEWWVE NLEKELGLWG  300
PMDESLAHPG PLGQVCYAGP LTELTDGDPV STYFQSGPTA SPLPEIASSS AVLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-26141172104C-Myb DNA-Binding Domain
1msf_C2e-26141172104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that regulates positively genes involved in anthocyanin biosynthesis such as A1. {ECO:0000269|PubMed:7920701}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00249DAPTransfer from AT1G79180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB02G35920.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1117200.0AK111720.1 Oryza sativa Japonica Group cDNA clone:J023030I19, full insert sequence.
GenBankAK1119330.0AK111933.1 Oryza sativa Japonica Group cDNA clone:001-017-B10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006647724.10.0PREDICTED: myb-related protein Zm1-like
SwissprotP200241e-138MYB1_MAIZE; Myb-related protein Zm1
TrEMBLJ3LG250.0J3LG25_ORYBR; Uncharacterized protein
STRINGOB02G35920.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21543798
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79180.13e-69myb domain protein 63
Publications ? help Back to Top
  1. Franken P,Schrell S,Peterson PA,Saedler H,Wienand U
    Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38.
    Plant J., 1994. 6(1): p. 21-30
    [PMID:7920701]