PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB02G36030.1

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

G2-like

Protein Properties

Length: 344aa MW: 37122 Da PI: 7.0165

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB02G36030.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.1	3.6e-32	163	216	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt+ LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ OB02G36030.1 163 PRMRWTTSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 216 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.33E-15	161	217	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	9.8E-29	161	216	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.4E-23	163	217	IPR006447	Myb domain, plants
Pfam	PF00249	1.7E-7	164	215	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence Send to blast
MELFPAHPDL QLQISPPPAT KSMDLGFWKR ALDSSTTTAT TNTAAATAAA PSIATSSSAP 60 VMTSGGAGSG GFYQAAVAPA NGQHHHHQLG GALQFLHRTQ PIPRQDAAGG AGGLPDLAFT 120 RPIRGIPVYN TSRPLXXXXX XXXXXXXXXX XXXAPAKRGA RAPRMRWTTS LHARFVHAVE 180 LLGGHERATP KSVLELMDVK DLTLAHVKSH LQMYRTIKTT DHKQPAPSYG QAKTVIEIPD 240 DNMFDINNTS GSESSVQQQA NLDGNEQESN MCALWSNNSS SRGAWFHDKS RDATPGDIKS 300 FEDVQSQSPE DDASDLNSSP FQIPPETVVV SAMKPNLDFT LGRM

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence Send to blast

MELFPAHPDL QLQISPPPAT KSMDLGFWKR ALDSSTTTAT TNTAAATAAA PSIATSSSAP  60
VMTSGGAGSG GFYQAAVAPA NGQHHHHQLG GALQFLHRTQ PIPRQDAAGG AGGLPDLAFT  120
RPIRGIPVYN TSRPLXXXXX XXXXXXXXXX XXXAPAKRGA RAPRMRWTTS LHARFVHAVE  180
LLGGHERATP KSVLELMDVK DLTLAHVKSH LQMYRTIKTT DHKQPAPSYG QAKTVIEIPD  240
DNMFDINNTS GSESSVQQQA NLDGNEQESN MCALWSNNSS SRGAWFHDKS RDATPGDIKS  300
FEDVQSQSPE DDASDLNSSP FQIPPETVVV SAMKPNLDFT LGRM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	6e-17	164	218	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	6e-17	164	218	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	6e-17	164	218	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	6e-17	164	218	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	6e-17	164	218	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	6e-17	164	218	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	6e-17	164	218	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	6e-17	164	218	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	6e-17	164	218	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	6e-17	164	218	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	6e-17	164	218	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	6e-17	164	218	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that regulates lateral organ polarity. Plays a role in lateral root formation and development. {ECO:0000269\|PubMed:15286295, ECO:0000269\|PubMed:17307928}.
UniProt	Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269\|PubMed:11525739, ECO:0000269\|PubMed:15286295, ECO:0000269\|PubMed:16623911, ECO:0000269\|PubMed:17307928}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB02G36030.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT069143	4e-67	BT069143.1 Zea mays full-length cDNA clone ZM_BFb0209N04 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015623606.1	1e-150	probable transcription factor KAN2 isoform X1
Swissprot	Q941I2	2e-40	KAN3_ARATH; Probable transcription factor KAN3
Swissprot	Q9C616	1e-39	KAN2_ARATH; Probable transcription factor KAN2
TrEMBL	J3LG36	0.0	J3LG36_ORYBR; Uncharacterized protein
STRING	OB02G36030.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9438	34	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17695.1	6e-35	G2-like family protein

Publications ? help Back to Top
Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis. Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71 [PMID:26108442]