PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB02G36150.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 552aa    MW: 55678.6 Da    PI: 6.4391
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB02G36150.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.49.7e-31282340259
                   --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                   +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  OB02G36150.1 282 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 340
                   699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081133.109276342IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.1E-31276342IPR003657WRKY domain
SuperFamilySSF1182903.92E-26279342IPR003657WRKY domain
SMARTSM007741.4E-37281341IPR003657WRKY domain
PfamPF031061.3E-25283340IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    Send to blast
MEGEQAGDLA DIVRAGGGGG GGGGGGGGWS EGRWPVMCDY FLQRMEGEQA GALADIVRAG  60
GAAAAGGGGG GSGSRGVPST ARTEWQLPPA GETGLFPLPP PSSSDGSGMS SGADAFGDPF  120
AGLPDPFGGD YPSSSAGAAA DFFDAVVTGS MDAGGVAKAG FVDLGVVGGG GCDGGVDGGG  180
GGGLLGMRKP ILPRGAMQMM PSVSPRAIRP YPIMAGHDAV KLGVPMAGGP CAFDAAAAGL  240
HMSSSPRAGG GIKRRKNQAR KVVCIPAPAA AGGRTSGEVV PSDLWAWRKY GQKPIKGSPY  300
PRGYYRCSSS KGCSARKQVE RSRTDPNMLV ITYTSEHNHP WPTQRNALAG STRSHHAKNS  360
NSSSSSSASK NNSSHSYCHQ TKPPVKAEPN DQAAAAVAAA ATTSTTATTT GTTGAGIPVK  420
EEAMAGSSSG TFQRQKSMDD NASAAATAAA AAGEGQHSDL MQQMFSQSYR PTIPEGAGGH  480
HDDFFADLAE LESDPMSLIF SKEYMATKPG GDPDKENTIG KELDPAYMLD WSTTVGTTAG  540
GSSFMQGEGG NL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B4e-25256343280Disease resistance protein RRS1
5w3x_D4e-25256343280Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB02G36150.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0731000.0AK073100.1 Oryza sativa Japonica Group cDNA clone:J033016K09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006647734.10.0PREDICTED: glycine, alanine and asparagine-rich protein-like
TrEMBLJ3LG480.0J3LG48_ORYBR; Uncharacterized protein
STRINGOB02G36150.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25923888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.13e-64WRKY DNA-binding protein 35