PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB02G36270.1

Common Name

LOC102704864

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

G2-like

Protein Properties

Length: 287aa MW: 31324.3 Da PI: 7.7262

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB02G36270.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.1	1e-33	31	85	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWtp+LHerFveav++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYRl OB02G36270.1 31 KPRLRWTPDLHERFVEAVTKLGGPDKATPKSVLRLMGMKGLTLYHLKSHLQKYRL 85 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	9.7E-33	28	86	IPR009057	Homeodomain-like
PROSITE profile	PS51294	14.032	28	88	IPR017930	Myb domain
TIGRFAMs	TIGR01557	9.2E-25	31	86	IPR006447	Myb domain, plants
SuperFamily	SSF46689	1.0E-16	31	88	IPR009057	Homeodomain-like
Pfam	PF00249	8.9E-10	33	84	IPR001005	SANT/Myb domain
Pfam	PF14379	1.0E-24	130	174	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MFEGMDRAGY GVGVGGAGAV GAGVVLSRDP KPRLRWTPDL HERFVEAVTK LGGPDKATPK 60 SVLRLMGMKG LTLYHLKSHL QKYRLGKQNK KDTGLEASRG AFAAHGISFS TAAPPTIPSA 120 ENNNTGETPL ADALRYQIEV QRKLHEQLEV QKKLQMRIEA QGKYLQSILE KAQNNLSYDA 180 TGTANLEATR TQLTDFNLAL SGFMNNVSQV CEQNNGELAK AISEDNLRTS DLGFQLYHGI 240 QESEDVECSQ DEGLLLLDLN IKGGYDHLSS GAMRGGESGL KISQHRR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-21	31	87	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-21	31	87	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-21	31	87	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-21	31	87	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-21	31	87	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-21	31	87	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-21	31	87	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-21	31	87	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00544	DAP	Transfer from AT5G45580	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB02G36270.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK059448	0.0	AK059448.1 Oryza sativa Japonica Group cDNA clone:001-028-A10, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006647740.1	0.0	PREDICTED: myb family transcription factor APL-like
Swissprot	C0SVS4	7e-69	PHLB_ARATH; Myb family transcription factor PHL11
TrEMBL	J3LG60	0.0	J3LG60_ORYBR; Uncharacterized protein
STRING	OB02G36270.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3940	34	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45580.1	1e-67	G2-like family protein

Link Out ? help Back to Top
Entrez Gene	102704864

Publications ? help Back to Top
Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation. New Phytol., 2016. 211(3): p. 912-25 [PMID:27125220]