PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB02G36730.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ZF-HD
Protein Properties Length: 246aa    MW: 25913.4 Da    PI: 4.922
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB02G36730.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer60.43.9e-19171212346
   ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaAC 46 
                   ++rY+eClkNhAa++G+h++DGCgEfm+s+g+   aaal CaA 
  OB02G36730.1 171 SWRYRECLKNHAARMGAHVLDGCGEFMSSPGDG--AAALACAAV 212
                   579**************************8887..99*****96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047709.2E-16172211IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.3E-17173212IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257746.0E-10173200IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152319.651174222IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MEYKRSSHVE EEEEEEEEED EDEEDEEEAG HHQYTTAAAV VATGATQQLH PQVLGSSASS  60
PSSLMDAAAF SRPLLPPNLS LVSPSPPPPG GSFLHAAAHH HGQARRVERE RTVEMPGGES  120
QHQVQRHHEP ARNGVLGGGG APHAASTLAL VGGGGGGGPR AGEGAAPEAP SWRYRECLKN  180
HAARMGAHVL DGCGEFMSSP GDGAAALACA AVNDDMYLSA NTRLGLEPFS FAFDAFRLQK  240
TLVIRT
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB02G36730.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4804961e-106AF480496.1 Oryza sativa clone BAC 49D11, complete sequence.
GenBankAP0053231e-106AP005323.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0680A05.
GenBankAP0058441e-106AP005844.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBb0060O16.
GenBankAP0149581e-106AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015688708.11e-144PREDICTED: zinc-finger homeodomain protein 7-like
SwissprotQ8S3Q97e-64ZHD7_ORYSJ; Zinc-finger homeodomain protein 7
TrEMBLJ3LGA61e-177J3LGA6_ORYBR; Uncharacterized protein
STRINGOB02G36730.11e-177(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134912329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.11e-09zinc finger homeodomain 1