PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB02G40600.1
Common NameLOC102722553
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 231aa    MW: 24327 Da    PI: 5.4198
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB02G40600.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.79.4e-21110161156
           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                   s+y+GVr+++ +g+W+AeIrdp+    + +r++lg f+tae+Aa+a++ a+++++g+
  OB02G40600.1 110 SKYRGVRRRP-WGKWAAEIRDPV----KgARVWLGPFDTAEDAARAYDVAALEFRGH 161
                   89********.**********75....44**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.91E-32110170No hitNo description
SuperFamilySSF541713.14E-24110170IPR016177DNA-binding domain
PfamPF008474.3E-14110161IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-32111169IPR001471AP2/ERF domain
PROSITE profilePS5103225.633111168IPR001471AP2/ERF domain
SMARTSM003801.1E-38111174IPR001471AP2/ERF domain
PRINTSPR003672.8E-11112123IPR001471AP2/ERF domain
PRINTSPR003672.8E-11134150IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MVPRLERAGG GFHLPNSERE DSLFIRALIS VVSGDTAVPA LLPATAAACG GVGGELVLAA  60
GSSSSDEGEE GEEEECSGAP AAASATGGVE GGVGKRRQRR RGAAGDGEGS KYRGVRRRPW  120
GKWAAEIRDP VKGARVWLGP FDTAEDAARA YDVAALEFRG HRAKLNFPAS SPAQRPRSLP  180
VPDSLRENCG SNASSPVQHA PEHAPAARDK EIWDGLQEIM MLDDGTFWSM P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-23108168263ATERF1
3gcc_A5e-23108168263ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
194100KRRQRRR
295100RRQRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB02G40600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006647961.11e-165PREDICTED: ethylene-responsive transcription factor ABR1-like
TrEMBLJ3LHE31e-163J3LHE3_ORYBR; Uncharacterized protein
STRINGOB02G40600.11e-164(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124236124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33710.11e-22ERF family protein