PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB02G41790.1
Common NameLOC102713602
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 364aa    MW: 40148.6 Da    PI: 4.6018
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB02G41790.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.22e-18118167255
           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   +++G+r+++ +g+W+AeIrdp++     r++lg+f +aeeAa+a++a +++++g
  OB02G41790.1 118 QFRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNSAEEAARAYDAEARRIRG 167
                   69*******.**********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.7E-31118176IPR001471AP2/ERF domain
PROSITE profilePS5103223.459118175IPR001471AP2/ERF domain
SuperFamilySSF541713.47E-21118175IPR016177DNA-binding domain
CDDcd000181.97E-31118177No hitNo description
SMARTSM003801.4E-36118181IPR001471AP2/ERF domain
PfamPF008474.6E-11119167IPR001471AP2/ERF domain
PRINTSPR003671.3E-10119130IPR001471AP2/ERF domain
PRINTSPR003671.3E-10141157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070483Biological Processdetection of hypoxia
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MCGGAILTSL KGHPAGSRRV TEALLWPEKK KPRWGGGGRR HFGGFMEEDE EDFEADFEEF  60
EVDSGESDLE LGVEDDDDDV IETKPVKRAL SRDNLSTITT AGFDGPAARS AKRKRKNQFR  120
GIRQRPWGKW AAEIRDPRKG VRVWLGTFNS AEEAARAYDA EARRIRGKKA KVNFPETPTT  180
AQKRRAGSTT AKAPKSKVEQ KPTVKPAFNN LVNTNAFVYP STNFTSNKPF VQPENMLFVP  240
AMNSAAPIED LIINSDQGSN SFGCSDLGWE NDTKTPDITS IAPISTIAEV DESAFIRSNT  300
DNSVAPPIME NSTVDLPDLE PYMRFLLDDG AGDSIDSLLN LDGSQDVASN MDLWSFDDMP  360
VSDF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-191171761373Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00204DAPTransfer from AT1G53910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB02G41790.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0640270.0AK064027.1 Oryza sativa Japonica Group cDNA clone:001-125-B02, full insert sequence.
GenBankAK1037830.0AK103783.1 Oryza sativa Japonica Group cDNA clone:J033145H23, full insert sequence.
GenBankAK1196430.0AK119643.1 Oryza sativa Japonica Group cDNA clone:002-130-F11, full insert sequence.
GenBankEU8372550.0EU837255.1 Oryza sativa Japonica Group clone KCS057H03 EREBP transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006648015.10.0PREDICTED: ethylene-responsive transcription factor 1
SwissprotQ6K7E60.0ERF1_ORYSJ; Ethylene-responsive transcription factor 1
TrEMBLJ3LHR20.0J3LHR2_ORYBR; Uncharacterized protein
STRINGOB02G41790.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103938134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.22e-38related to AP2 12
Publications ? help Back to Top
  1. Kim CY, et al.
    Identification of rice blast fungal elicitor-responsive genes by differential display analysis.
    Mol. Plant Microbe Interact., 2000. 13(4): p. 470-4
    [PMID:10755311]
  2. Koo SC, et al.
    OsBWMK1 mediates SA-dependent defense responses by activating the transcription factor OsWRKY33.
    Biochem. Biophys. Res. Commun., 2009. 387(2): p. 365-70
    [PMID:19607808]
  3. Iwamoto M,Takano M
    Phytochrome-regulated EBL1 contributes to ACO1 upregulation in rice.
    Biotechnol. Lett., 2011. 33(1): p. 173-8
    [PMID:20872166]
  4. Serra TS, et al.
    OsRMC, a negative regulator of salt stress response in rice, is regulated by two AP2/ERF transcription factors.
    Plant Mol. Biol., 2013. 82(4-5): p. 439-55
    [PMID:23703395]
  5. Jisha V, et al.
    Overexpression of an AP2/ERF Type Transcription Factor OsEREBP1 Confers Biotic and Abiotic Stress Tolerance in Rice.
    PLoS ONE, 2015. 10(6): p. e0127831
    [PMID:26035591]
  6. Lourenço TF, et al.
    The Rice E3-Ubiquitin Ligase HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE1 Modulates the Expression of ROOT MEANDER CURLING, a Gene Involved in Root Mechanosensing, through the Interaction with Two ETHYLENE-RESPONSE FACTOR Transcription Factors.
    Plant Physiol., 2015. 169(3): p. 2275-87
    [PMID:26381316]