PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB02G43220.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 324aa    MW: 35114.8 Da    PI: 5.5926
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB02G43220.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.53.7e-18241274134
          GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                   C++C+  kTp+WR gp g+ktLCnaCG++y++ +
  OB02G43220.1 241 CTHCQIEKTPQWRAGPLGPKTLCNACGVRYKSGR 274
                   *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.372235271IPR000679Zinc finger, GATA-type
SMARTSM004012.4E-15235285IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.38E-14239298No hitNo description
Gene3DG3DSA:3.30.50.102.1E-14239272IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.51E-14240297No hitNo description
PfamPF003208.3E-16241274IPR000679Zinc finger, GATA-type
PROSITE patternPS003440241266IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MAGVGFVEEM LREQSLLEAT CGDLFDHIED LLDFPKEESA ADCDDLDMDM AQLEWLSDLF  60
DDGTIPHEPS FPGANCAAPI KASALAANAG VVLPDKMEEA LFRSSSPISV LEHSGFNAAP  120
NGGSSSSSSS SASSSSESFS GNGHAWSAPV SPRPEPPVLI IPARARSKRS RPSAFPAVRT  180
SPAETETTIL VPTPMYSSTS SHSDPESIAE SSPHPXXXXX XXXXXXXXXX XXXXXXXVRR  240
CTHCQIEKTP QWRAGPLGPK TLCNACGVRY KSGRLFPEYR PAASPTFVPS IHSNSHKKVV  300
EMRQKATRSA DASCDLLQYI RRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00130DAPTransfer from AT1G08010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB02G43220.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0691581e-173AC069158.6 Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0049O12, from chromosome 2, complete sequence.
GenBankAK1078671e-173AK107867.1 Oryza sativa Japonica Group cDNA clone:002-134-C03, full insert sequence.
GenBankAP0041531e-173AP004153.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1111_C07.
GenBankAP0149581e-173AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCT8289651e-173CT828965.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA219J10, full insert sequence.
GenBankCT8289661e-173CT828966.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA222D18, full insert sequence.
GenBankCT8289671e-173CT828967.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA250G07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015688759.10.0PREDICTED: GATA transcription factor 6-like
TrEMBLJ3LI550.0J3LI55_ORYBR; Uncharacterized protein
STRINGOB02G43220.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51693451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.24e-38GATA family protein