PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB02G44430.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 78aa    MW: 8344.08 Da    PI: 7.4182
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB02G44430.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.26.3e-052951123
                  EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                  y C+ C + F++   L  H+++H
  OB02G44430.1 29 YNCTFCRRGFPTAQALGGHMNVH 51
                  89*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.57E-72655No hitNo description
Gene3DG3DSA:3.30.160.607.3E-52755IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.4712956IPR007087Zinc finger, C2H2
PfamPF139128.3E-72953IPR007087Zinc finger, C2H2
PROSITE patternPS0002803151IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 78 aa     Download sequence    Send to blast
SPGGELDKAE VEMREAGSDD DEAGTRQPYN CTFCRRGFPT AQALGGHMNV HRKDRVGRAT  60
PSSTTAAAAA RRSVSYDT
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB02G44430.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0040202e-62AP004020.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1119_A01.
GenBankAP0048782e-62AP004878.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0474F11.
GenBankAP0149582e-62AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126102e-62CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624572.15e-25zinc finger protein 11
TrEMBLJ3LIH63e-50J3LIH6_ORYBR; Uncharacterized protein
STRINGOB02G44430.14e-51(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145472224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.14e-13C2H2 family protein