PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB0325G10010.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 125aa    MW: 13966.8 Da    PI: 10.4091
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB0325G10010.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM639.5e-20101223114
             NAM   3 pGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      GfrF+P+ ee+v +yL + ++g++  ++ee+i+++d+y +eP+dL +     +++++ + +fF++ ++      r +r++  g+W ++ + +++
  OB0325G10010.1  10 IGFRFNPSPEEVVAFYLPRLIAGQQpSDTEECIHRADVYGAEPKDLAAefapVARSTNGDRFFFTQCRRIR---GRFSRKAGGGTWVSQSS-RAI 100
                     7*********************9995666677**************8535543334444789999998865...5999999*****98865.9** PP

             NAM  93 lskkgelvglkktLvfykgrap 114
                     ++ +g+++g  k + f k++ +
  OB0325G10010.1 101 KNPQGAKIGESKNFRFKKKDGK 122
                     ****************865444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-186122IPR003441NAC domain
PROSITE profilePS5100520.3718125IPR003441NAC domain
PfamPF023651.5E-1011119IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MADLSFFLGI GFRFNPSPEE VVAFYLPRLI AGQQPSDTEE CIHRADVYGA EPKDLAAEFA  60
PVARSTNGDR FFFTQCRRIR GRFSRKAGGG TWVSQSSRAI KNPQGAKIGE SKNFRFKKKD  120
GKNTD
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB0325G10010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006665127.13e-84PREDICTED: NAC domain-containing protein 90-like, partial
TrEMBLJ3LIV77e-87J3LIV7_ORYBR; Uncharacterized protein
STRINGOB0325G10010.11e-87(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18322799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12910.11e-10NAC family protein